Identification and Characterization of a Large Effect QTL from Oryza glumaepatula Revealed Pi68(t) as Putative Candidate Gene for Rice Blast Resistance

Rice

Table 1 Summary of QTLs identified across different mapping populations with ICIM software

Mapping population	Population	Population size	Chrm	Marker intervals	LOD	R²	AE	DE
1. INGR15002 / BPT 5204	F₂	188	3	RM14635(6.8) – RM14761(9.8)	11.7	34.7	−0.89	−0.08
			7	RM21052(3.7) – RM 1377 (12.0)	8.6	25.5	−0.83	0.01
	F₃	188	3	RM14635(6.8) – RM251(10)	11.7	34.8	−0.89	−0.14
			7	RM21052(3.7) – RM 1377 (12.0)	8.5	25.4	−0.83	−0.02
2. INGR15002 / BPT 5204 (NE_Leaf)	F₂	188	3	RM14635(6.8) – RM251(10)	10.9	28.8	−1.11	0.33
2. INGR15002 / BPT 5204 (NE_Leaf)	F₃	188	3	RM14635(6.8) – RM251(10)	10.8	28.7	−1.11	0.33
3. INGR15002 / BPT 5204 (NE_Neck)	F₂	188	3	RM14635(6.8) – RM251(10)	9.1	32.7	−1.07	−0.16
3. INGR15002 / BPT 5204 (NE_Neck)	F₃	188	3	RM14635(6.8) – RM251(10)	8.7	32.6	−1.02	−0.01
4. INGR15002 / CO-39	F₂	188	3	RM3195(4.4) – RM251(10)	11.6	35.5	35.5	−1.1
4. INGR15002 / CO-39	F₂	188	7	RM21052(3.7) - RM1377 (12.0)	5.9	14.9	14.9	−0.7
5. INGR15002 / BPT5204//BPT 5204	BC₁F_2:3	188	3	RM14635(6.8) – RM14761(9.8)	9.6	30.7	−1.08	0.19
5. INGR15002 / BPT5204//BPT 5204	BC₁F_2:3	188	7	RM21052(3.7) – RM1377(12.0)	7.5	22.8	−0.98	−0.02

Numbers in parenthesis are the physical positions of the markers
Chrm Chromosome, LOD Logarithm of Odds, AE Additive Effect, DE Dominant Effect, R² Phenotypic Variance