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Table 1 Summary of QTLs identified across different mapping populations with ICIM software

From: Identification and Characterization of a Large Effect QTL from Oryza glumaepatula Revealed Pi68(t) as Putative Candidate Gene for Rice Blast Resistance

Mapping population Population Population size Chrm Marker intervals LOD R2 AE DE
1. INGR15002 / BPT 5204 F2 188 3 RM14635(6.8) – RM14761(9.8) 11.7 34.7 −0.89 −0.08
   7 RM21052(3.7) – RM 1377 (12.0) 8.6 25.5 −0.83 0.01
F3 188 3 RM14635(6.8) – RM251(10) 11.7 34.8 −0.89 −0.14
   7 RM21052(3.7) – RM 1377 (12.0) 8.5 25.4 −0.83 −0.02
2. INGR15002 / BPT 5204 (NE_Leaf) F2 188 3 RM14635(6.8) – RM251(10) 10.9 28.8 −1.11 0.33
F3 188 3 RM14635(6.8) – RM251(10) 10.8 28.7 −1.11 0.33
3. INGR15002 / BPT 5204 (NE_Neck) F2 188 3 RM14635(6.8) – RM251(10) 9.1 32.7 −1.07 −0.16
F3 188 3 RM14635(6.8) – RM251(10) 8.7 32.6 −1.02 −0.01
4. INGR15002 / CO-39 F2 188 3 RM3195(4.4) – RM251(10) 11.6 35.5 35.5 −1.1
7 RM21052(3.7) - RM1377 (12.0) 5.9 14.9 14.9 −0.7
5. INGR15002 / BPT5204//BPT 5204 BC1F2:3 188 3 RM14635(6.8) – RM14761(9.8) 9.6 30.7 −1.08 0.19
7 RM21052(3.7) – RM1377(12.0) 7.5 22.8 −0.98 −0.02
  1. Numbers in parenthesis are the physical positions of the markers
  2. Chrm Chromosome, LOD Logarithm of Odds, AE Additive Effect, DE Dominant Effect, R2 Phenotypic Variance