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Table 5 Genotype and phenotype of IRRI new released varieties

From: The broad-spectrum rice blast resistance (R) gene Pita2 encodes a novel R protein unique from Pita

Entry No

Variety

Genotype using InDel and CAPS markers

Phenotype to differential isolates

Z12F/R

18729F3/R4-PvuII

PO6–6

CA89

BN209

IK81–25

M39–1–3-8-1

M101–1–2-9-1

BN111

 

IR64

D

N

S

S

R

R

R

R

R

 

CO39

I

Y

S

S

S

S

S

S

S

 

IRBLta2-Re [CO]

D

N

S

S

R

R

R

R

R

PR 1

NSIC Rc 216

I

N

S

R

R

R

R

R

S

PR 2

NSIC Rc 222

I

N

S

R

R

R

R

R

S

PR 3

NSIC Rc 224

D

N

R

R

R

R

R

R

R

PR 4

NSIC Rc 226

I

N

S

R

R

R

R

R

S

PR 5

NSIC Rc 238

D

N

R

R

R

R

R

R

R

PR 6

NSIC Rc 240

D

N

S

R

R

R

R

R

R

PR 7

NSIC Rc 298

I

N

S

S

R

R

R

R

S

PR 8

NSIC Rc 300

I

d

S

S

R

R

S

S

S

PR 9

NSIC Rc 302

I

N

S

S

S

R

R

S

R

PR 10

NSIC Rc 308

I

N

S

S

R

R

R

R

S

PR 11

NSIC Rc 352

I

N

S

S

R

R

R

R

S

PR 12

NSIC Rc 356

D

N

R

R

R

R

R

R

R

PR 13

NSIC Rc 182

I

N

S

R

R

R

R

R

S

PR 14

NSIC Rc 184

I

N

S

S

S

R

R

S

S

PR 15

NSIC Rc 290

D

N

S

S

R

R

R

R

R

PR 16

NSIC Rc 294

I

N

S

S

R

R

R

R

S

PR 17

NSIC Rc 296

I

N

S

S

R

R

R

R

S

PR 18

NSIC Rc 324

I

N

S

S

R

R

R

R

S

PR 19

NSIC Rc 328

D

N

R

R

R

R

R

R

R

PR 20

NSIC Rc 330

I

N

S

R

R

R

R

R

R

PR 21

NSIC Rc 332

D

N

S

R

R

R

R

R

R

PR 22

NSIC Rc 334

I

N

R

S

R

R

R

R

S

PR 23

NSIC Rc 336

I

N

S

S

R

R

R

R

R

PR 24

NSIC Rc 338

D

N

S

S

R

R

R

R

R

PR 25

NSIC Rc 340

I

d

S

S

R

R

R

R

R

PR 26

NSIC Rc 392

D

N

S

S

R

R

R

R

R

PR 27

NSIC Rc 192

I

d

R

S

S

R

S

S

R

PR 28

NSIC Rc 272

I

N

R

S

R

R

R

R

R

PR 29

NSIC Rc 274

I

N

R

R

R

R

R

R

R

PR 30

NSIC Rc 278

D

N

S

S

R

R

R

R

R

PR 31

NSIC Rc 280

I

d

S

S

R

R

R

S

S

PR 32

NSIC Rc 282

D

N

S

S

R

R

R

R

R

PR 33

NSIC Rc 284

I

N

S

S

R

R

R

R

S

PR 34

NSIC Rc 286

I

N

S

S

R

R

R

R

S

PR 35

NSIC Rc 288

I

d

S

S

R

S

S

S

R

PR 36

NSIC Rc 238

D

N

R

R

R

R

R

R

R

PR 37

NSIC Rc 346

I

N

S

S

R

R

S

R

R

PR 38

NSIC Rc 25

I

N

R

R

R

R

S

R

R

PR 39

PSB Rc 18-Sub1

D

N

S

S

R

R

R

R

R

PR 40

NSIC Rc 21SR

I

N

S

S

R

R

R

R

S

PR 41

NSIC Rc 218SR

I

N

S

R

R

R

R

S

S

PR 42

NSIC Rc 220SR

I

Y

R

R

R

R

R

R

R

PR 43

NSIC Rc 304SR

I

Y

R

R

R

S

R

S

R

PR 44

NSIC Rc 342SR

I

d

S

S

R

R

S

S

R

PR 45

NSIC Rc 344SR

D

N

S

S

R

R

R

R

R

PR 46

Mestiso 30

I

N

R

S

R

R

R

R

S

  1. I: Amplicon size is 226 bp; D: Amplicon size is 214 bp; N: no cleavage site with PvuII and DNA fragment size is 812 bp; Y: containing cleavage site of PvuII and fragments’ sizes are 416 bp and 408 bp; d: containing a small deletion outside InDel region; R: resistant; S: susceptible; PO6–6 and CA89 are virulent isolates to Pita2 whereas other 5 isolates are avirulent