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Rice
Fig. 3 | Rice

Fig. 3

From: Genome-Wide Association Analysis Dissects the Genetic Basis of the Grain Carbon and Nitrogen Contents in Milled Rice

Fig. 3

Haplotype analyses for the GNC and nucleotide diversity of the LOC_Os01g06240 candidate gene at qNC-1.1. a Haplotype analyses and comparisons of the mean GNC vs LOC_Os01g06240 haplotypes in five rice subgroups. Each red point around each boxplot indicates the GNC of one accession with the relative haplotype in its subgroup. Haplotypes in fewer than 10 accessions are not shown. b Nucleotide diversity (π), (c) Tajima’s D statistics, and (d) the ratio of the nucleotide diversity between modern varieties and landraces for the 600-kb genomic region flanking LOC_Os01g06240. Red and blue lines represent XI and GJ subgroups, respectively. The translucent green rectangle represents the LOC_Os01g06240 genomic region. e Frequencies of different haplotypes of LOC_Os01g06240 in XI and GJ landraces and modern varieties

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