Rice

Table 2 The distribution of detected SNPs between both parents Zhefu802 and CMG and between the two extreme pools

From: Genomic and transcriptomic analysis reveal molecular basis of salinity tolerance in a novel strong salt-tolerant rice landrace Changmaogu

Type	Zhefu802_vs_CMG	S-pool_vs_R-pool
Intergenic	57,105	17,740
Intragenic	36	8
Intron	168,873	51,854
Upstream	345,387	109,660
Downstream	268,158	84,689
UTR_5_Prime	7979	2607
UTR_3_Prime	17,650	5114
Splice_site_acceptor	563	165
Splice_site_donor	542	165
Splice_site_region	3889	1224
Start_gained	1809	551
Start_lost	254	101
Non_synonymous_start	17	5
Synonymous_coding	69,741	24,034
Non_synonymous_coding	96,226	32,239
Synonymous_stop	97	34
Stop_gained	5114	1603
Stop_lost	298	128
Other	0	2
Total	1,043,738	331,923

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