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Table 2 The distribution of detected SNPs between both parents Zhefu802 and CMG and between the two extreme pools

From: Genomic and transcriptomic analysis reveal molecular basis of salinity tolerance in a novel strong salt-tolerant rice landrace Changmaogu

TypeZhefu802_vs_CMGS-pool_vs_R-pool
Intergenic57,10517,740
Intragenic368
Intron168,87351,854
Upstream345,387109,660
Downstream268,15884,689
UTR_5_Prime79792607
UTR_3_Prime17,6505114
Splice_site_acceptor563165
Splice_site_donor542165
Splice_site_region38891224
Start_gained1809551
Start_lost254101
Non_synonymous_start175
Synonymous_coding69,74124,034
Non_synonymous_coding96,22632,239
Synonymous_stop9734
Stop_gained51141603
Stop_lost298128
Other02
Total1,043,738331,923