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Table 1 Coverage of the reads mapping to the Nipponbare reference genome from resequencing of the indica rice variety Zhefu802 and a rice landrace CMG using Hiseq 2000.

From: Genomic and transcriptomic analysis reveal molecular basis of salinity tolerance in a novel strong salt-tolerant rice landrace Changmaogu

BMK ID

Clean_Reads

Clean_Base

Mapped (%)

Properly_mapped (%)

Q30(%)

CMG

42,143,655

12,625,063,756

96.39

90.33

91.82

Zhefu802

35,794,170

10,720,972,860

97.42

91.65

93.66

S-pool

71,884,976

21,536,286,334

98.01

91.94

92.37

R-pool

72,863,530

21,826,349,910

97.71

92.03

92.78