Rice Stress-Resistant SNP Database

Rice

Table 1 Number of stress-resistant SNPs located in different regions of rice genome

Stress types	3’UTR^b	5’UTR^b	Downstream^b	Intergenic^b	Intron^b	CDS^a	Upstream^b
Heat Stress	93,767	55,759	653,058	635,265	63,162	205,078	2,780,114
Alkali Stress	66,920	37,644	388,645	331,550	43,425	147,100	1,755,014
Salt Stress	79,546	44,882	470,148	409,469	51,300	175,835	2,081,462
Flood Stress	67,419	37,926	391,338	334,562	43,764	142,223	1,787,105
Cold Stress	58,798	33,903	370,763	332,310	40,007	126,918	1,612,926
Zinc Stress	74,843	41,853	411,990	330,483	48,027	161,716	1,908,842
Blast Fungus	81,491	47,765	522,328	480,785	53,365	183,547	2,256,982
Bacteria Leaf Blight	63,649	35,647	368,539	319,163	41,456	138,399	1,633,392
Bacteria Sheath Blight	51,663	29,237	331,287	272,583	34,716	112,617	1,356,611
Bacterial Rice Planthopper	72,686	41,112	417,411	347,624	45,912	155,346	1,890,893
Bacteria Stripe leaf blight	49,221	27,107	269,081	203,861	31,815	103,938	1,274,279
Brown Planthopper Pest	79,293	44,994	475,951	410,522	52,299	173,293	2,109,723
Gall Midge Pest	50,495	29,177	291,121	230,150	32,704	107,667	1,367,183
Small Brown Planthoppers Pest	86,755	47,381	465,586	363,512	55,723	182,484	2,205,066
Whitebacked Planthopper Pest	94,541	53,730	552,635	462,375	61,037	203,404	2,508,144
Rice Leafroller Pest	79,704	44,658	448,760	358,452	50,581	172,603	2,072,717

^aCDS includes the SNPs in exonic region including nsSNPs (non-synonymous SNPs) and sSNPs (synonymous SNPs)
^bIntergenic, 5’UTR, Intron 3’UTR, Upstream and Downstream indicate that No. of stress-resistant SNPs located in the Intergenic, 5’UTR, Intronic, 3′ UTR, upstream and downstream regions of a gene