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Table 1 Number of stress-resistant SNPs located in different regions of rice genome

From: Rice Stress-Resistant SNP Database

Stress types3’UTRb5’UTRbDownstreambIntergenicbIntronbCDSaUpstreamb
Heat Stress93,76755,759653,058635,26563,162205,0782,780,114
Alkali Stress66,92037,644388,645331,55043,425147,1001,755,014
Salt Stress79,54644,882470,148409,46951,300175,8352,081,462
Flood Stress67,41937,926391,338334,56243,764142,2231,787,105
Cold Stress58,79833,903370,763332,31040,007126,9181,612,926
Zinc Stress74,84341,853411,990330,48348,027161,7161,908,842
Blast Fungus81,49147,765522,328480,78553,365183,5472,256,982
Bacteria Leaf Blight63,64935,647368,539319,16341,456138,3991,633,392
Bacteria Sheath Blight51,66329,237331,287272,58334,716112,6171,356,611
Bacterial Rice Planthopper72,68641,112417,411347,62445,912155,3461,890,893
Bacteria Stripe leaf blight49,22127,107269,081203,86131,815103,9381,274,279
Brown Planthopper Pest79,29344,994475,951410,52252,299173,2932,109,723
Gall Midge Pest50,49529,177291,121230,15032,704107,6671,367,183
Small Brown Planthoppers Pest86,75547,381465,586363,51255,723182,4842,205,066
Whitebacked Planthopper Pest94,54153,730552,635462,37561,037203,4042,508,144
Rice Leafroller Pest79,70444,658448,760358,45250,581172,6032,072,717
  1. aCDS includes the SNPs in exonic region including nsSNPs (non-synonymous SNPs) and sSNPs (synonymous SNPs)
  2. bIntergenic, 5’UTR, Intron 3’UTR, Upstream and Downstream indicate that No. of stress-resistant SNPs located in the Intergenic, 5’UTR, Intronic, 3′ UTR, upstream and downstream regions of a gene