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Fig. 3 | Rice

Fig. 3

From: Challenges and Perspectives in Homology-Directed Gene Targeting in Monocot Plants

Fig. 3

Non-DSB precise gene targeting approaches. a Base of approach editing. Cytosine Base Editors (CBEs) and Adenosine Base Editors (ABEs) are the two types of base editors that have been published so far. CBEs: Dead Cas9 (blue) binds to target C (green) via the RNA (pink) guide, which mediates the separation of local DNA strands. A tethered APOBEC1 (green) enzyme by cytosine deamination converts the single-stranded target C to U. The initial G: C is replaced by the A: T base pair at the target location through DNA repair or replication. ABEs: A hypothetical deoxyadenosine deaminase (red) and catalytically impaired nCas9 (Cas9 D10A nickase) bind target DNA in the RNA guide to expose a small bubble of single-stranded DNA that catalyzes the conversion of A to I within this bubble. b Oligonucleotide-directed mutagenesis process. A gene repair oligonucleotide (GRON), which contains designed modifications, is delivered and paired with the target DNA sequence. GRON creates a mismatch at the target site and triggers a DNA repair mechanism. DNA repair enzymes detect the mismatch and repair the target DNA sequence using GRON as a template. Once the repair process is completed during cell division and multiplication, the GRON is removed and degraded. The target sequence is modified with designed changes. The representative DNA fragments and protein structures are not pictured to scale. c Prime editing. Prime editor is a CRISPR/Cas complex developed by fusion of a reverse transcriptase (RT) to a C-terminal of nickase Cas9 (H840A) and a prime editing gRNA (pegRNA) with a 3 ‘extension that could bind to the 3 ‘nicked strands produced by the nCas9. When bound, the 3′-OH free nicked strand is used as a substratum for the RT to copy genetic information from the 3 ‘extension of pegRNA

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