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Fig. 4 | Rice

Fig. 4

From: Genome-Wide Association Analysis of the Genetic Basis for Sheath Blight Resistance in Rice

Fig. 4

Associated regions for relative lesion height (RLH) in the Geng panel and a haplotype analysis of the candidate genes within the associated regions on chromosomes 6 and 10. Local Manhattan plots (top) and linkage disequilibrium heatmaps (bottom) surrounding the hotspot regions on chromosomes 10 (a) and 6 (d). Red dots indicate the position of the peak SNPs identified by FarmCPU, while green arrows and dots indicate the position of the candidate genes within the LD blocks. Gene structure and haplotype analysis of the sheath blight resistance candidate genes LOC_Os10g28050 (b) and LOC_Os06g04510 (e). Haplotypes with fewer than 10 accessions are not shown. Relative lesion height of accessions in different haplotypes of LOC_Os10g28050 (c) and LOC_Os06g04510 (f) in different association panels. Characters on top of boxplots indicate significant differences based on Duncan’s multiple comparison tests (P < 0.05)

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