Fig. 3
From: Genome-Wide Association Analysis of the Genetic Basis for Sheath Blight Resistance in Rice
Manhattan and quantile-quantile plots for relative lesion height (RLH) for the whole, Xian, Geng, and Aus association panels based on the multi-locus GWAS method of FarmCPU. a, e Whole association panel. b, f Xian association panel. c, g Geng association panel. d, h Aus association panel. The strength of the associations for the RLH is indicated as the negative logarithm of the P value. Horizontal blue lines in the Manhattan plots indicate the following genome-wide suggestive thresholds (P values adjusted by a Bonferroni correction based on the effective number of independent markers calculated using GEC software): 2.16 × 10− 6, 3.28 × 10− 6, 6.57 × 10− 6, and 5.34 × 10− 6 for the whole, Xian, Geng, and Aus association panels, respectively. Horizontal red lines in the Manhattan plots indicate the following genome-wide significance thresholds (P < 0.05): 1.08 × 10− 7, 1.64 × 10− 7, 6.57 × 10− 6, and 2.67 × 10− 7 for the whole, Xian, Geng, and Aus association panels, respectively