Early cold stress responses in post-meiotic anthers from tolerant and sensitive rice cultivars

González-Schain, Nahuel; Roig-Villanova, Irma; Kater, Martin M.

doi:10.1186/s12284-019-0350-6

Rice

Table 1 Cold-stress responses of ethylene metabolism-related genes in tolerant rice anthers. [this table should be added immediately before Discussion]

From: Early cold stress responses in post-meiotic anthers from tolerant and sensitive rice cultivars

LOCUS ID	Gene	RPKM (ERY CO)	RPKM (ERY CS)	Reference
Ethylene synthesis
LOC_Os03g51740	OsACS1	1.10	1.88	Rzewuski and Sauter, 2008
LOC_Os04g48850	OsACS2	0.16	0.24	Rzewuski and Sauter, 2008
LOC_Os05g10780	OsACS3	2.51	3.22	Rzewuski and Sauter, 2008
LOC_Os05g25490	OsACS4	0.01	0.02	Rzewuski and Sauter, 2008
LOC_Os01g09700	OsACS5	0.02	0.00	Rzewuski and Sauter, 2008
LOC_Os06g03990	OsACS6	20.73	25.47	Rzewuski and Sauter, 2008
LOC_Os09g27820	OsACO1	2.58	3.67	Rzewuski and Sauter, 2008
LOC_Os02g53180	OsACO2^a	26.83	108.39	Rzewuski and Sauter, 2008
LOC_Os09g27750	OsACO3	1.18	1.09	Rzewuski and Sauter, 2008
LOC_Os11g08380	OsACO4^a	5.86	17.86	Rzewuski and Sauter, 2008
LOC_Os05g05680	OsACO5	0.15	0.12	Rzewuski and Sauter, 2008
LOC_Os05g05670	OsACO6	0.10	0.08	Rzewuski and Sauter, 2008
LOC_Os01g39860	OsACO7	0.41	0.32	Rzewuski and Sauter, 2008
Ethylene sensing
LOC_Os03g49500	OsERS1	79.28	103.50	Rzewuski and Sauter, 2008
LOC_Os05g06320	OsERS2	12.77	17.76	Rzewuski and Sauter, 2008
LOC_Os04g08740	OsETR2	27.79	40.83	Rzewuski and Sauter, 2008
LOC_Os02g57530	OsETR3	2.03	4.82	Rzewuski and Sauter, 2008
LOC_Os07g15540	OsETR4	0.28	0.54	Rzewuski and Sauter, 2008
LOC_Os01g51430	OsRTE1	14.80	11.03	Rzewuski and Sauter, 2008
LOC_Os05g46240	OsRTE2^a	13.06	44.74	Rzewuski and Sauter, 2008
LOC_Os03g58520	OsRTE3	22.40	26.74	Rzewuski and Sauter, 2008
Ethylene signal transduction
LOC_Os02g32610	OsCTR1	4.08	4.67	Rzewuski and Sauter, 2008
LOC_Os09g39320	OsCTR2	17.38	26.22	Rzewuski and Sauter, 2008
LOC_Os04g52140	OsCTR3	14.08	10.66	Rzewuski and Sauter, 2008
LOC_Os03g58060	OsEIN5	39.04	42.93	Rzewuski and Sauter, 2008
LOC_Os06g40360	OsEBF1^a	31.00	65.78	Rzewuski and Sauter, 2008
LOC_Os02g10700	OsEBF2^a	85.29	189.51	Rzewuski and Sauter, 2008
LOC_Os07g06130	OsEIN2	31.87	48.60	Rzewuski and Sauter, 2008
LOC_Os03g20780	OsEIL1	0.77	4.21	Rzewuski and Sauter, 2008
LOC_Os07g48630	OsEIL2^a	78.08	220.30	Rzewuski and Sauter, 2008
LOC_Os09g31400	OsEIL3	23.82	33.25	Rzewuski and Sauter, 2008
LOC_Os08g39830	OsEIL4	6.42	6.80	Rzewuski and Sauter, 2008
LOC_Os02g36510	OsEIL5	0.32	0.07	Rzewuski and Sauter, 2008
LOC_Os04g38400	OsEIL6	3.40	3.65	Rzewuski and Sauter, 2008
OsERFs
LOC_Os02g54160	OsEREBP1	377.98	404.30	Cheong et al., 2003
LOC_Os03g08460	OsEBP89	0.03	0.04	Mao et al., 2006
LOC_Os09g11460	Sub1C^a	4.46	16.20	Fukao et al., 2006
LOC_Os12g41060	SK1/SK2	0.03	0.06	Hattori et al., 2009
LOC_Os09g28440	OsEATB	0.30	1.46	Qi et al., 2011
LOC_Os02g10760	OsWR1	194.76	180.64	Wang et al., 2012
LOC_Os08g35240	OsDERF1	0.00	0.00	Wan et al., 2011
LOC_Os01g58420	OsERF3^a	70.93	284.72	Wan et al., 2011
LOC_Os04g52090	OsAP2–39	98.69	225.31	Wan et al., 2011
LOC_Os04g46220	OsERF1^a	4.60	25.86	Hu et al., 2008
Other ethylene related transcription factors (TF)
LOC_Os02g45010	OsbHLH076^a	9.36	21.93	This work
LOC_Os07g28890	OsbHLH077^a	14.40	41.89	This work
LOC_Os07g22730	OsERF136^a	0.19	4.11	This work
LOC_Os03g08500	OsERF64^a	265.10	1022.77	This work
LOC_Os03g08490	OsERF69^a	0.56	6.52	This work
LOC_Os05g41780	OsERF74^a	126.50	328.52	This work
LOC_Os09g39850	OsERF87^a	0.38	6.54	This work
LOC_Os05g25260	OsERF56^a	5.04	16.33	This work
LOC_Os01g49830	AP2/EREBP127^a	6.64	19.14	This work
LOC_Os04g46440	OsERF34^a	5.00	24.81	This work
LOC_Os04g55520	OsERF8^a	13.93	50.32	This work
LOC_Os01g21120	OsERF68^a	2.17	8.14	This work
LOC_Os07g42510	OsERF65^a	2.64	9.91	This work

^a, SSTF genes from ERY RNA-seq datasets. CO and CS, control or cold-stress treated samples, respectively

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