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Table 1 Bakanae resistance QTLs mapped from previous studies

From: Genome-wide association mapping of gene loci affecting disease resistance in the rice-Fusarium fujikuroi pathosystem

QTL

Chr.

QTL region (Mb)a

PVE (%)b

Mapping population

Trait

Publication

qBK1_628091

1

0.62–1.04

–

Japonica germplasm (138 accessions)

0–4 disease scale

Volante et al. 2017

qBK1.2

1

3.10–3.36*

24.74

F14 RILs

mortality rate

Fiyaz et al. 2016

qBK1.3

1

4.65–8.41*

6.49

F14 RILs

mortality rate

Fiyaz et al. 2016

qBK1WD

1

13.54–15.13

20.20

F2:4 RILs

proportion of healthy plants

Lee et al. 2018

qFfR1

1

22.56–24.10

–

F2 and F3

mortality rate

Ji et al. 2017

qBK1

1

23.21–23.72

65

BC6F4

proportion of healthy plants

Hur et al. 2015

qBK1

1

23.64–23.67

–

BC7F4

proportion of healthy plants

Lee et al. 2019

qBK1.1

1

23.32–23.34*

4.76

F14 RILs

mortality rate

Fiyaz et al. 2016

qB1

1

34.10–34.95*

13.40

Double haploid

Difference in seedling length

Yang et al. 2006

qBK3.1

3

21.43–21.78

9.10

F14 RILs

mortality rate

Fiyaz et al. 2016

qBK4_31750955

4

31.16–31.75

–

Japonica germplasm (138 accessions)

0–4 disease scale

Volante et al. 2017

qB10

10

18.72–19.23*

13.30

Double haploid

Difference in seedling length

Yang et al. 2006

  1. aThe genomic position is based on the MSU7 Nipponbare reference genome
  2. bPhenotypic variation explained
  3. *QTL region was estimated using the physical positions of the markers