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Rice

Table 1 GO enrichment in DEGs between Dongjin plants and sui4 mutants

From: Mutations in the microRNA172 binding site of SUPERNUMERARY BRACT (SNB) suppress internode elongation in rice

Categorya

Term

Countb

P-valuec

Benjaminid

GOTERM_BP

GO:0016051: carbohydrate biosynthetic process

10

1.00E-04

0.028881

GOTERM_BP

GO:0000271: polysaccharide biosynthetic process

8

1.49E-04

0.02157

GOTERM_CC

GO:0031988: membrane-bounded vesicle

44

2.55E-04

0.017723

GOTERM_CC

GO:0016023: cytoplasmic membrane-bounded vesicle

44

2.55E-04

0.017723

GOTERM_BP

GO:0034637: cellular carbohydrate biosynthetic process

9

2.94E-04

0.028317

GOTERM_CC

GO:0031982: vesicle

44

3.76E-04

0.013082

GOTERM_CC

GO:0031410: cytoplasmic vesicle

44

3.76E-04

0.013082

GOTERM_BP

GO:0009250: glucan biosynthetic process

7

5.52E-04

0.039626

GOTERM_BP

GO:0006073: cellular glucan metabolic process

8

7.46E-04

0.042801

GOTERM_BP

GO:0033692: cellular polysxaccharide biosynthetic process

7

7.96E-04

0.038118

GOTERM_BP

GO:0044264: cellular polysaccharide metabolic process

8

9.89E-04

0.040558

  1. aDatabase where gene set was defined. BP: Biological process, CC Cellular compartment
  2. bNumber of genes in the term
  3. cFisher’s exact P-value was adopted to measure gene enrichment in annotation terms
  4. dP-value corrected using the Benjamini method to reduce false positives caused by multiple testing
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