From: Signatures of differential selection in chloroplast genome between japonica and indica
Groups | Number of Accessions | Primary | High-quality | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Number of variants | Ts/Tv | Number of variants | Ts/Tv | |||||||
SNPs | InDels | Total | SNPs | InDels | Total | |||||
Wild rice | 54 | 2836 | 966 | 3802 | 1.772 | 1162 | 212 | 1374 | 1.741 | |
Cultivated | Indica | 66 | 105 | 101 | 206 | 0.764 | 43 | 24 | 67 | 1.688 |
Te_Japonica | 253 | 75 | 86 | 161 | 0.531 | 17 | 15 | 32 | 1.125 | |
Tr_Japonica | 25 | 61 | 77 | 138 | 0.488 | 11 | 9 | 20 | 0.833 | |
Aus | 9 | 97 | 100 | 197 | 0.831 | 44 | 25 | 69 | 1.588 | |
Aromatic | 2 | 64 | 79 | 143 | 0.524 | 13 | 9 | 22 | 1.167 | |
Admixture | 3 | 62 | 75 | 137 | 0.512 | 12 | 9 | 21 | 1.000 | |
Total | 412 | 2867 | 976 | 3843 | 1.767 | 1172 | 156 | 1389 | 1.751 |