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Fig. 3 | Rice

Fig. 3

From: 1k-RiCA (1K-Rice Custom Amplicon) a novel genotyping amplicon-based SNP assay for genetics and breeding applications in rice

Fig. 3

Principal component analysis of 431 O. sativa S. indica accessions using the 1k-RiCA genotypic data. PCA on 431 ‘Indica’ accessions including 177 diverse lines (ind), 41 ‘black rice’ (black rice), and 213 lines derived from 7 bi-parental families from IRRI’s Favorable Environments Breeding Program (Family). Diverse lines were color and coded as open maroon circles ('ind' - indica), as solid black squares ('black rice'). Elite breeding lines were classified by family (‘Family’) based on their pedigree data. Blue dots ('Family-1'), open blue triangles ('Family-2'), open magenta diamonds ('Family-3'), open inverted brown triangles ('Family-4'), green crosses ('Family-5'), ochre dots ('Family-6') and yellow diamonds ('Family-7')

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