Identification of new rice cultivars and resistance loci against rice black-streaked dwarf virus disease through genome-wide association study

Rice

Table 3 Statistic information of the five significant association SNP markers in Kaifeng and Yutai locations

Marker	Site	Allele	Kaifeng			Yutai			Average
Marker	Site	Allele	Effect (%)	Obs	Marker R²	Effect (%)	Obs	Marker R²	Effect (%)	Obs	Marker R²
id6010277	19426454	A	−16.63	142	5.44	−19.66	137	9.94	−16.93	142	8.73
id6010277	19426454	C	0.00	155	5.44	0.00	152	9.94	0.00	155	8.73
id6010459	19737177	T	−17.82	151	6.04	−15.17	146	5.66	−15.36	151	6.96
id6010459	19737177	A	0.00	153	6.04	0.00	150	5.66	0.00	153	6.96
id6010472	19739735	C	−19.21	142	6.94	−15.90	137	6.16	−16.24	142	7.73
id6010472	19739735	T	0.00	158	6.94	0.00	155	6.16	0.00	158	7.73
id6010489	19785959	G	−19.32	144	6.98	−16.22	139	6.36	−16.48	144	7.89
id6010489	19785959	A	0.00	160	6.98	0.00	157	6.36	0.00	160	7.89
id6010523	19827029	T	−17.52	150	4.92	−15.38	144	5.03	−15.50	150	6.02
id6010523	19827029	G	0.00	154	4.92	0.00	152	5.03	0.00	154	6.02