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Table 4 List of QTLs Detected for Survivability in the BC1F2:3 Population of Kalarata and NSIC Rc238 and Kalarata and NSIC Rc222 Using White-Colored Grain

From: Deciphering Genetics Underlying Stable Anaerobic Germination in Rice: Phenotyping, QTL Identification, and Interaction Analysis

QTL NAME CHR PEAK MARKER POSITION (cM) PHYSICAL POSITION (Mb) LOD PVE ADD
Kalarata/NSIC Rc238
Survivability at 14 DAS (Screen house)
qSUR3–1 Rc238-SCR-14 3 SWRm_00276 192.0 36.38 4.41 17.89 16.49
Survivability at 14 DAS (Tray-on-table)
qSUR3–1 Rc238-TAB-14 3 SWRm_00276 192.0 36.38 3.93 16.12 14.18
Survivability at 21 DAS (Screen house)
qSUR3–1 Rc238-SCR-21 3 SWRm_00276 192.0 36.38 4.21 17.14 16.46
Kalarata/NSIC Rc222
Survivability at 14 DAS (Screen house)
qSUR3–1 Rc222-SCR-14 3 SWRm_00272 8.0 35.39 4.72 19.55 12.70
qSUR6–1 Rc222-SCR-14 6 SWRm_00495 135.3 25.03 4.52 18.78 12.09
Survivability at 14 DAS (Tray-on-table)
qSUR3–1 Rc222-TAB-14 3 SWRm_00276 2.0 36.38 4.69 19.43 13.46
qSUR6–1 Rc222-TAB-14 6 SWRm_00495 135.3 25.03 4.45 18.55 13.57
Survivability at 21 DAS (Screen house)
qSUR3–1 Rc222-SCR-21 3 SWRm_00272 10.0 35.39 4.67 19.30 13.50
qSUR6–1 Rc222-SCR-21 6 SWRm_00495 135.3 25.03 3.90 16.50 12.30
  1. q indicates QTL, LOD logarithm of odds, PVE percent phenotypic variation explained, ADD additive effects of the peak marker