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Table 2 List of QTLs Detected for Anaerobic Germination Potential in the BC1F2:3 Population of Kalarata and NSIC Rc238

From: Deciphering Genetics Underlying Stable Anaerobic Germination in Rice: Phenotyping, QTL Identification, and Interaction Analysis

QTL NAME CHR PEAK MARKER POS (cM) INT (cM) LOD PVE ADD
Survivability at 14 DAS
Screenhouse conditions
qSUR3–1 Rc238-SCR-14 3 SWRm_00276 190.0 178–198 4.90 11.06 13.04
qSUR5–1 Rc238-SCR-14 5 SWRm_00427 108.0 104–118 4.50 10.82 −12.47
qSUR6–1 Rc238-SCR-14 6 SWRm_00495 36.0 32–46 6.00 14.38 11.66
qSUR7–1 Rc238-SCR-14 7 SWRm_01153 62.0 59–66 18.40 36.68 20.13
qSUR8–1 Rc238-SCR-14 8 SWRm_00599 66.2 64–74 5.20 12.04 −14.38
Tray-on-table conditions
qSUR3–1 Rc238-TAB-14 3 SWRm_00276 192.0 182–198 5.80 12.79 10.85
qSUR5–1 Rc238-TAB-14 5 SWRm_00427 108.0 104–116 4.10 9.76 −13.09
qSUR6–1 Rc238-TAB-14 6 SWRm_00495 46.0 38–50 6.60 15.15 9.79
qSUR7–1 Rc238-TAB-14 7 SWRm_01153 60.0 58–66 15.30 31.58 17.15
qSUR8–1 Rc238-TAB-14 8 SWRm_00599 66.2 64–74 4.90 11.70 −13.14
Survivability at 21 DAS
Screenhouse conditions
qSUR3–1 Rc238-SCR-21 3 SWRm_00276 194.0 182–202 4.87 11.04 14.03
qSUR5–1 Rc238-SCR-21 5 SWRm_00427 110.0 106–116 4.49 10.77 −14.8
qSUR6–1 Rc238-SCR-21 6 SWRm_00495 38.0 34–44 5.97 14.28 12.72
qSUR7–1 Rc238-SCR-21 7 SWRm_01153 62.0 59–66 20.31 39.66 24.28
qSUR8–1 Rc238-SCR-21 8 SWRm_00599 66.2 64–76 5.21 12.03 −16.00
Tray-on-table conditions
qSUR3–1 Rc238-TAB-21 3 SWRm_00276 192.0 182–198 5.55 12.32 11.79
qSUR5–1 Rc238-TAB-21 5 SWRm_00427 110.0 106–116 4.57 10.81 −16.90
qSUR6–1 Rc238-TAB-21 6 SWRm_00495 44.0 38–48 6.96 16.01 12.11
qSUR7–1 Rc238-TAB-21 7 SWRm_01153 62.0 58–66 17.50 35.17 22.76
qSUR8–1 Rc238-TAB-21 8 SWRm_00599 66.2 64–74 4.78 11.28 −15.5
  1. q indicates QTL, SCR screenhouse, TAB tray-on-table, POS position, INT position interval, LOD logarithm of odds, PVE percent phenotypic variation explained, ADD additive effects of the peak marker