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Table 2 List of QTLs Detected for Anaerobic Germination Potential in the BC1F2:3 Population of Kalarata and NSIC Rc238

From: Deciphering Genetics Underlying Stable Anaerobic Germination in Rice: Phenotyping, QTL Identification, and Interaction Analysis

QTL NAME

CHR

PEAK MARKER

POS (cM)

INT (cM)

LOD

PVE

ADD

Survivability at 14 DAS

Screenhouse conditions

qSUR3–1 Rc238-SCR-14

3

SWRm_00276

190.0

178–198

4.90

11.06

13.04

qSUR5–1 Rc238-SCR-14

5

SWRm_00427

108.0

104–118

4.50

10.82

−12.47

qSUR6–1 Rc238-SCR-14

6

SWRm_00495

36.0

32–46

6.00

14.38

11.66

qSUR7–1 Rc238-SCR-14

7

SWRm_01153

62.0

59–66

18.40

36.68

20.13

qSUR8–1 Rc238-SCR-14

8

SWRm_00599

66.2

64–74

5.20

12.04

−14.38

Tray-on-table conditions

qSUR3–1 Rc238-TAB-14

3

SWRm_00276

192.0

182–198

5.80

12.79

10.85

qSUR5–1 Rc238-TAB-14

5

SWRm_00427

108.0

104–116

4.10

9.76

−13.09

qSUR6–1 Rc238-TAB-14

6

SWRm_00495

46.0

38–50

6.60

15.15

9.79

qSUR7–1 Rc238-TAB-14

7

SWRm_01153

60.0

58–66

15.30

31.58

17.15

qSUR8–1 Rc238-TAB-14

8

SWRm_00599

66.2

64–74

4.90

11.70

−13.14

Survivability at 21 DAS

Screenhouse conditions

qSUR3–1 Rc238-SCR-21

3

SWRm_00276

194.0

182–202

4.87

11.04

14.03

qSUR5–1 Rc238-SCR-21

5

SWRm_00427

110.0

106–116

4.49

10.77

−14.8

qSUR6–1 Rc238-SCR-21

6

SWRm_00495

38.0

34–44

5.97

14.28

12.72

qSUR7–1 Rc238-SCR-21

7

SWRm_01153

62.0

59–66

20.31

39.66

24.28

qSUR8–1 Rc238-SCR-21

8

SWRm_00599

66.2

64–76

5.21

12.03

−16.00

Tray-on-table conditions

qSUR3–1 Rc238-TAB-21

3

SWRm_00276

192.0

182–198

5.55

12.32

11.79

qSUR5–1 Rc238-TAB-21

5

SWRm_00427

110.0

106–116

4.57

10.81

−16.90

qSUR6–1 Rc238-TAB-21

6

SWRm_00495

44.0

38–48

6.96

16.01

12.11

qSUR7–1 Rc238-TAB-21

7

SWRm_01153

62.0

58–66

17.50

35.17

22.76

qSUR8–1 Rc238-TAB-21

8

SWRm_00599

66.2

64–74

4.78

11.28

−15.5

  1. q indicates QTL, SCR screenhouse, TAB tray-on-table, POS position, INT position interval, LOD logarithm of odds, PVE percent phenotypic variation explained, ADD additive effects of the peak marker