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Table 1 The 23 LATNs and their rice genomic information

From: Dissection of the Genetic Architecture of Rice Tillering using a Genome-wide Association Study

LATN Name_of_Top-SNPs SNP_Types Chr. Positions p-value Annotation Reference
1 SNP-1.5635230. A/G 1 5,636,231 1.04E-05 Novel_1 /
2 SNP-1.7037988. C/G 1 7,038,989 2.95E-05 CCP1 (Yan et al., 2015)
3 SNP-1.16070366. A/G 1 16,071,393 4.56E-05 Novel_2 /
4 SNP-1.18536011. A/G 1 18,537,058 4.03E-06 Novel_3 /
5 SNP-1.36879662. T/C 1 36,880,706 1.68E-05 Novel_4 /
6 SNP-1.37003809. C/G 1 37,004,853 6.07E-07 Novel_5 /
7 SNP-1.37664127. A/G 1 37,665,171 1.56E-09 REL1, MOC2, PLA2 (Chen et al., 2015),(Koumoto et al., 2013),(Kawakatsu et al., 2006)
8 SNP-3.1121412. T/C 3 1,122,415 6.93E-10 OsDCL1 (Zhang et al., 2015)
9 SNP-4.19405464. C/G 4 19,577,430 1.31E-05 OsAFB2,LAX2 (Xia et al., 2012), (Tabuchi et al., 2011)
10 SNP-4.33497579. T/G 4 33,682,697 5.26E-05 MOC3, OsGS2 (Lu et al., 2015b), (Cai & Xiao, 2010)
11 SNP-5.7728359. C/T 5 7,728,419 5.05E-07 Novel_6 /
12 SNP-5.18643585. C/T 5 18,706,103 4.52E-10 Novel_7 /
13 SNP-7.12702296. A/G 7 12,703,290 4.29E-05 Novel_8 /
14 SNP-7.16935997. A/T 7 16,936,991 3.16E-07 Novel_9 /
15 SNP-8.19480736. A/G 8 19,483,450 2.72E-05 PAY1 (Zhao et al., 2015)
16 SNP-8.22337472. A/G 8 22,340,186 1.53E-08 Novel_10 /
17 SNP-8.26426233. T/C 8 26,428,948 4.74E-06 OsPIN5b (Lu et al., 2015a)
18 SNP-9.4181935. T/C 9 4,182,936 8.20E-07 Novel_11 /
19 SNP-9.22712391. A/T 9 22,712,873 5.89E-05 OsAHP2 (Sun et al., 2014)
20 SNP-10.504597. A/G 10 505,622 1.13E-06 Novel_12 /
21 SNP-11.8537869. A/C 11 8,543,260 1.60E-06 Novel_13 /
22 SNP-11.21947025. A/C 11 22,413,155 3.33E-10 Novel_14 /
23 SNP-11.26432763. T/C 11 26,904,377 1.02E-05 Novel_15 /