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Table 2 Candidate genes primer sets for quantitative RT-PCR

From: Fine mapping of qBK1, a major QTL for bakanae disease resistance in rice

Primer ID

Forward primer (5′-3′)

Reverse primer (5′-3′)

LOC_Os01g41770

5′ AGAAACAAGATAACTGGGCCA 3’

5′ TAAGAATACCAAAGAAGGTA 3’

LOC_Os01g41780

5′ AATTCCCTAGCTTCCTTC 3’

5′ ACTTCCTGATATGTTGTTATG 3’

LOC_Os01g41790

5′ CGGTGAAGACCAGGATTTGT 3’

5′ ATGGATCCTCTCATGGCAAG 3’

LOC_Os01g41800

5′ TTGTTCATCCACCATGATCC 3’

5′ ACGCCTAAGCCTGCTGGTT 3’

UBQ5(ubiquitin 5)

5′ ACCACTTCGACCGCCACTACT 3’

5′ ACGCCTAAGCCTGCTGGTT 3’