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Table 1 Distribution of substituted segments on 12 chromosomes for 3 sets of CSSLs

From: Development of Three Sets of High-Throughput Genotyped Rice Chromosome Segment Substitution Lines and QTL Mapping for Eleven Traits

Chromosome

Number of segments

Segments length (Mb)

Average length (Mb)

Coverage length (Mb)

Coverage rate

A

B

C

A

B

C

A

B

C

A

B

C

A

B

C

1

38

29

37

129.81

123.45

117.72

3.42

4.26

3.18

42.00

39.45

40.72

97.1%

91.2%

94.1%

2

38

18

37

108.45

77.55

129.26

2.85

4.31

3.49

35.94

28.37

33.42

100.0%

78.9%

93.0%

3

44

30

37

131.20

81.61

109.86

2.98

2.72

2.97

36.16

32.64

36.41

99.3%

89.7%

100.0%

4

28

20

38

100.89

98.40

136.39

3.60

4.92

3.59

35.50

35.50

28.03

100.0%

100.0%

78.9%

5

24

30

24

111.55

95.62

84.14

4.65

3.19

3.51

29.96

24.86

27.41

100.0%

83.0%

91.5%

6

13

10

29

57.40

47.83

91.20

4.42

4.78

3.14

29.97

21.05

28.06

95.9%

67.3%

89.8%

7

25

23

30

108.86

84.12

75.46

4.35

3.66

2.52

27.83

23.50

26.60

93.8%

79.2%

89.6%

8

24

13

25

90.06

55.53

62.97

3.75

4.27

2.52

25.05

27.09

18.28

88.1%

95.2%

64.3%

9

15

14

30

72.87

56.25

71.59

4.86

4.02

2.39

23.01

21.09

17.90

100.0%

91.7%

77.8%

10

19

15

26

75.40

40.02

83.52

3.97

2.67

3.21

23.20

21.46

23.20

100.0%

92.5%

100.0%

11

26

17

26

84.54

57.41

114.19

3.25

3.38

4.39

27.13

27.13

23.34

93.5%

93.5%

80.4%

12

16

11

28

80.58

49.69

99.38

5.04

4.52

3.55

27.19

23.50

27.53

98.8%

85.4%

100.0%

Total

310

230

367

1152.61

868.10

1177.96

3.72

3.77

3.21

363.14

325.70

331.40

97.3%

87.3%

88.8%

  1. A, B and C represent A set CSSLs, B set CSSLs and C set CSSLs, which derived from a cross between PA64s and 9311, Nipponbare and 9311, and PA64s and Nipponbare, respectively