Table 2 The mapped QTLs associated with alkalinity tolerance of japonica rice at seedling stage
Traits | QTLs | Lead SNPs | Chr. | Position | P value | R2(%) | Known genes |
|---|---|---|---|---|---|---|---|
SAT | qSAT3 | Chr3_14978662 | 3 | 14978662 | 3.36E-08 | 13.36 | OsIRO3 |
qSAT4 | Chr4_21534673 | 4 | 21534673 | 3.87E-08 | 13.97 | Â | |
SNC | qSNC3 | Chr3_14978662 | 3 | 14978662 | 2.87E-08 | 13.64 | OsIRO3 |
SNK | qSNK3-1 | Chr3_15093871 | 3 | 15093871 | 4.06E-08 | 13.39 | OsIRO3 |
qSNK3-2 | Chr3_16913725 | 3 | 16913725 | 5.55E-08 | 13.17 | OsHAP2E | |
qSNK4-1 | Chr4_11383297 | 4 | 11383297 | 5.99E-08 | 13.79 | Â | |
qSNK4-2 | Chr4_30958528 | 4 | 30958528 | 3.23E-08 | 13.85 | OsHKT1;1, OsHKT1;4, OsHAK15, OsHAK11 | |
qSNK10 | Chr10_14244765 | 10 | 14244765 | 4.74E-08 | 13.42 | OsGR3 |