Infrastructures of systems biology that facilitate functional genomic study in rice

Rice

Table 7 List of databases that integrate omics or specialized gene familes

Category	Database	Resource link	Publication	Status	Citation/since
Integrative omics	CARMO	http://bioinfo.sibs.ac.cn/carmo/	10.1111/tpj.12894	○^a	15/2015
Characterized genes	OGRO	http://qtaro.abr.affrc.go.jp/ogro/table	10.1186/1939-8433-5-26	○	75/2012
	funRiceGenes	https://funricegenes.github.io/	10.1093/gigascience/gix119	○	3/2017
	RiceWiki	http://wiki.ic4r.org/index.php/Main_Page	10.1093/nar/gkt926	○	19/2014
Abiotic stress	DroughtDB	http://pgsb.helmholtz-muenchen.de/droughtdb/	10.1093/database/bav046	○	25/2015
	STIFDB	http://caps.ncbs.res.in/stifdb2/	10.1093/pcp/pcs185	○	80/2013
	RiceSRTFDB	http://www.nipgr.res.in/RiceSRTFDB.html	10.1093/database/bat027	○	38/2013
Domain specific	Grassius	https://grassius.org/index.php	10.1104/pp.108.128579	○	180/2009
	RKD 2	http://ricephylogenomics-khu.org/kinase/	10.1186/s12284-016-0106-5	○	6/2016
	RGTD	http://ricephylogenomics.ucdavis.edu/cellwalls/gt/	10.1093/mp/ssn052	○	75/2008
	RGHD	http://ricephylogenomics.ucdavis.edu/cellwalls/gh/	10.3389/fpls.2013.00330	○	14/2013
	PlnTFDB	http://plntfdb.bio.uni-potsdam.de/v3.0/	10.1093/nar/gkp805	○	412/2009
	RiTE	https://www.genome.arizona.edu/modules/xnews/article.php?storyid=254	10.1186/s12864-015-1762-3	○	23/2015
Localization	MPIC	http://webapps.plantenergy.uwa.edu.au/applications/mpic/	10.1093/pcp/pcu186	○	19/2015
Indica specific	RICD	http://server.ncgr.ac.cn/ricd/	10.1186/1471-2229-8-118	○	29/2008