Skip to main content

Table 4 List of databases for rice metabolomics

From: Infrastructures of systems biology that facilitate functional genomic study in rice

Category

Database

Resource link

Reference

Status

Citation/since

Metabolite

MetaboLights

https://www.ebi.ac.uk/metabolights/

10.1093/nar/gks1004

â—‹ a

47/2016

KEGG_rice

https://www.genome.jp/kegg-bin/show_organism?menu_type=pathway_maps&org=dosa

10.1093/nar/27.1.29

â—‹

11,709/1999

Plant Reactome

http://plantreactome.gramene.org/index.php?lang=en

10.1093/nar/gkw932

â—‹

21/2017

RICECYC

http://pathway.gramene.org/gramene/ricecyc.shtml

10.1093/nar/gkj154

â—‹

52/2103

OryzaCYC

https://plantcyc.org/databases/oryzacyc/6.0

10.1104/pp.16.01942

â—‹

29/2017

Pathway analysis

MapMan

https://mapman.gabipd.org/home

10.1111/j.1365-313X.2004.02016.x

â—‹

2139/2004

Panther

http://www.pantherdb.org/

10.1093/nar/gkg115

â—‹

526/2003

Plant GSEA

http://structuralbiology.cau.edu.cn/PlantGSEA/index.php

10.1093/nar/gkt281

â—‹

111/2013

AgriGO

http://bioinfo.cau.edu.cn/agriGO/

10.1093/nar/gkq310

â—‹

1579/2010

KEGG Mapper

https://www.genome.jp/kegg/mapper.html

10.1093/nar/gkr988

â—‹

3122/2017

  1. aindicates that relating data is currently working