Infrastructures of systems biology that facilitate functional genomic study in rice

Rice

Table 3 List of databases for rice proteomics

Category	Database	Resource link	Reference	Status	Citation/since
Proteome	MCDRP	http://www.genomeindia.org/biocuration/whatsnewver6.php	10.1093/nar/gkt1072	○ ^a	20/2014
	OryzaPG-DB	https://github.com/MoHelmy/oryza-PG/	10.1186/1471-2229-11-63	Data available	50/2011
	Plant-PrAS	http://plant-pras.riken.jp/	10.1093/pcp/pcu176	○	10/2015
Protein Protein interaction	Rice Interactions Viewer	http://bar.utoronto.ca/interactions/cgi-bin/rice_interactions_viewer.cgi	10.1186/1939-8433-5-15	○	28/2012
	DIPOS	http://comp-sysbio.org/dipos/?id=1	10.1039/c1mb05120b	○	22/2011
	RiceNet	https://www.inetbio.org/ricenet/	10.1093/nar/gkv253	○	132/2011
	PRIN	http://bis.zju.edu.cn/prin/	10.1186/1471-2105-12-161	○	92/2011
	STRING	https://string-db.org/	10.1093/nar/gkw937	○	638/2000
Ortholog analysis	POGsDB	http://pogs.uoregon.edu/#/	10.1371/journal.pone.0082569	○	33/2007
	GreenPhyl v4	http://www.greenphyl.org/cgi-bin/index.cgi	10.1093/nar/gkq811	○	97/2006
	InParanoid	http://inparanoid.sbc.su.se/cgi-bin/index.cgi	10.1093/nar/gku1203	○	712/2005
	Plant Ortholog Browser	https://nrcmonsrv01.nrc.ca/pob/	10.1186/s12864-015-1496-2	○	4/2015
	OMA browser	https://omabrowser.org/oma/home/	10.1093/bioinformatics/btm295	○	125/2007