Identification of spontaneous mutation for broad-spectrum brown planthopper resistance in a large, long-term fast neutron mutagenized rice population

Rice

Table 5 Association between candidate genes with BPH resistance in mutant lines based on HPs using linear regression and ANOVA. Three BPH populations were used in this study, i.e., CNT, TPY, and UBN. KASP-SNP markers using for HP specification were indicated for each gene

BPH	Gene	P value	PVE (%)	Significant HPs	Haplotype patterns						Mean AUC	count	Damage reducing ratio (DRR)
CNT	F-box 119	0.039*	24.8	2	KASP-SNP	R04006388017	R04006388095						0.688
					mutant	Hetero	G				36.667	3
					wt	C	G				53.25	12
	BPH9_Chr12	0.005**	40.6	2	KASP-SNP	R1222886067	R1222886105						0.535
					mutant	G	T				28.333	3
					wt	A	G				52.923	13
TPY	inorganic phosphate transporter	0.047*	13.5	1 (WT)	KASP-SNP	R04005867219							1.373
					mutant	G					58.951	7
					wt	C					42.937	16
	gamma thionin protein	0.012*	38.2	2	KASP-SNP	R04006069830	R04006069877	R04006069900					0.556
					mutant	G	G	G			31.08	8
					wt	G	A	A			55.78	9
	F-box 118	0.01**	30.9	3	KASP-SNP	R04006263057	R04006263087	R04006263168					0.581
					mutant	G	T	G			33.707	4
					wt	C	A	C			57.999	12
	F-box 119	0.005**	40.4	3	KASP-SNP	R04006388017	R04006388095						0.506
					mutant	A	C				29.332	5
					wt	C	G				57.999	12
	LR10	0.046*	26.7	2	KASP-SNP	R04006451404	R04006451424	R04006451469	R04006451485	R04006451495			0.602
					mutant	C	A	A	G	G	34.63	9
					wt	T	C	G	A	T	57.54	11
	OsSTPS2	0.006**	38.6	2	KASP-SNP	OsSTPS2_SNP1	OsSTPS2_SNP2	OsSTPS2_SNP3	OsSTPS2_21bp_indel				0.604
					mutant	G	T	C	Insertion		36.25	12
					wt	G	T	C	deletion		60	6
	Verticillium wilt resistance protein	0.020*	19.6	2	KASP-SNP	R04016672214							0.688
					mutant	T					42.764	17
					wt	G					62.112	6
	BPH9_Chr12	< 0.001**	71	2	KASP-SNP	R1222886067	R1222886105						0.254
					mutant	G	T				14.667	3
					wt	A	G				57.667	13
UBN	BPH9_Chr12	< 0.001**	83.3	2	KASP-SNP	R1222886067	R1222886105						0.464
					mutant	G	T				28.5	3
					wt	A	G				61.411	13