Identification of spontaneous mutation for broad-spectrum brown planthopper resistance in a large, long-term fast neutron mutagenized rice population

Kamolsukyeunyong, Wintai; Ruengphayak, Siriphat; Chumwong, Pantharika; Kusumawati, Lucia; Chaichoompu, Ekawat; Jamboonsri, Watchareewan; Saensuk, Chatree; Phoonsiri, Kunyakarn; Toojinda, Theerayut; Vanavichit, Apichart

doi:10.1186/s12284-019-0274-1

Rice

Table 3 Association between markers and BPH resistance in BIL population based on linear regression analysis. Five BPH populations were used, KPP, PSL, UBN, TPY, and HTL. R² indicating the proportion of the phenotypic variation contributed by each marker

From: Identification of spontaneous mutation for broad-spectrum brown planthopper resistance in a large, long-term fast neutron mutagenized rice population

BPH	Sliding window	Marker	LOC no.	Chr	P-value	R²	KDML105 allele		RH allele
BPH	Sliding window	Marker	LOC no.	Chr	P-value	R²	count	AUC means	count	AUC means
HTL	QBPH4.1	OsLecRK3_SNP	LOC_Os04g12580	4	< 0.001**	29.6	16	29.812	76	20.474
		R04006263057	LOC_Os04g11450	4	0.008**	9.6	18	22.333	64	21.375
		R04006263168	LOC_Os04h11450	4	0.048*	5.4	16	21.5	65	21.462
	QBPH4.2	OsSTPS2_21bp_indel	LOC_Os04g27430	4	< 0.001**	17.2	11	28.909	77	20.87
		R04015916153	LOC_Os04g26910	4	0.005**	9.2	20	21.9	62	21.177
		R04016672214	LOC_Os04g28210	4	0.014*	7.1	18	23.167	68	22.456
	Chr6:0.03–2.03 Mb	BPH32-SNP	LOC_Os06g03240	6	0.001**	12.4	19	25.61	72	20.59
KPP	QBPH4.1	OsLecRK3_SNP	LOC_Os04g12580	4	< 0.001**	54.9	16	23	76	13.447
		R04006451469	LOC_Os04g11780	4	0.047*	4.5	17	14.412	66	14.773
		R04006659915	LOC_Os04g12110	4	0.026*	6.9	10	15.7	72	14.944
	QBPH4.2	OsSTPS2_21bp_indel	LOC_Os04g27430	4	< 0.001**	49.8	11	14.182	77	13.649
	Chr6:0.03–2.03 Mb	Bph32-SNP	LOC_Os06g03240	6	0.793	na	na	na	na	na
PSL	QBPH4.1	OsLecRK3-SNP	LOC_Os04g12580	4	< 0.001**	21.8	16	28.5	76	21.118
	QBPH4.2	OsSTPS2_21bp_indel	LOC_Os04g27430	4	< 0.001**	13.9	11	27.273	77	21.377
		R04016380993	LOC_Os04g27720	4	0.011*	7.6	24	21.75	65	23.077
	Chr6:0.03–2.03 Mb	BPH32-SNP	LOC_Os06g03240	6	0.436	na	na	na	na	na
TPY	QBPH4.1	OsLecRK3-SNP	LOC_Os04g12580	4	< 0.001**	16.4	16	24.188	76	19.316
	QBPH4.2	OsSTPS2_21bp_indel	LOC_Os04g27430	4	0.007**	8.5	11	23.636	77	19.532
	Chr6:0.03–2.03 Mb	BPH32-SNP	LOC_Os06g03240	6	0.966	na	na	na	na	na
UBN	QBPH4.1	OsLecRK3-SNP	LOC_Os04g12580	4	< 0.001**	43.7	16	27.25	76	16.908
		R04006659915	LOC_Os04g12110	4	0.033*	6.3	10	19.7	72	18.556
	QBPH4.2	OsSTPS2_21bp_indel	LOC_Os04g27430	4	< 0.001**	29.8	11	26.636	77	17.26
		R04015916153	LOC_Os04g26910	4	0.033*	5.3	20	17.6	62	18.339
		R04016380993	LOC_Os04g27720	4	0.043*	4.7	24	17.542	65	19.462
	Chr6:0.03–2.03 Mb	BPH32-SNP	LOC_Os06g03240	6	0.059	na	na	na	na	na

*Significant at P = 0.05
**Significant at P = 0.001

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