Position | LOC identifier | gene product name | KASP-SNP marker | SNP S/R | SI in QS | SI in QR | SI in IndS | SI in IndR | SNP pos / CDS length | SNP effect | AAC | AAC position/protein length |
---|---|---|---|---|---|---|---|---|---|---|---|---|
5,806,676 | LOC_Os04g10680 | zinc finger, C3HC4 type domain containing protein |  | T/C | 0.0 | 100.0 | 0.0 | 100.0 | 2071/3059 | – |  |  |
5,867,185 | LOC_Os04g10800 | inorganic phosphate transporter |  | A/G | NA | NA | 0.0 | 100.0 | 534/1527 | – |  |  |
5,867,219 | LOC_Os04g10800 | inorganic phosphate transporter | R04005867219 | G/C | 0.0 | 85.0 | 0.0 | 100.0 | 568/1527 | + | A > P | 190/508 |
5,867,260 | LOC_Os04g10800 | inorganic phosphate transporter |  | T/C | 0.9 | 82.9 | 0.0 | 100.0 | 609/1527 | – |  |  |
5,867,320 | LOC_Os04g10800 | inorganic phosphate transporter |  | T/G | 0.0 | 80.0 | 0.0 | 100.0 | 669/1527 | – |  |  |
6,069,830 | LOC_Os04g11165 | gamma-thionin family domain containing protein | R04006069830 | G/T | NA | NA | 100.0 | 0.0 | 201/216 | + | stop codon | 67/71 |
6,069,877 | LOC_Os04g11165 | gamma-thionin family domain containing protein | R04006069877 | A/G | 0.0 | 81.0 | 0.0 | 81.0 | 154/216 | + | C > R | 52/71 |
6,069,900 | LOC_Os04g11165 | gamma-thionin family domain containing protein | R04006069900 | A/G | 0.0 | 81.0 | 0.0 | 81.0 | 131/216 | + | I > T | 44/71 |
6,263,052 | LOC_Os04g11450 | OsFBX118 - F-box domain containing protein |  | A/G | 8.2 | 91.7 | 0.0 | 88.9 | 1011/1480 | – |  |  |
6,263,057 | LOC_Os04g11450 | OsFBX118 - F-box domain containing protein | R04006263057 | G/C | 91.8 | 4.0 | 100.0 | 0.0 | 922/1203 | + | Q > E | 308/400 |
6,263,087 | LOC_Os04g11450 | OsFBX118 - F-box domain containing protein | R04006263087 | A/T | 8.2 | 92.0 | 0.0 | 90.0 | 892/1203 | + | Y > N | 298/400 |
6,263,168 | LOC_Os04g11450 | OsFBX118 - F-box domain containing protein | R04006263168 | C/G | 38.8 | 96.9 | 0.0 | 96.8 | 811/1203 | + | V > L | 271/400 |
6,263,172 | LOC_Os04g11450 | OsFBX118 - F-box domain containing protein |  | T/A | 36.7 | 96.5 | 0.0 | 96.0 | 891/1480 | – |  |  |
6,388,017 | LOC_Os04g11660 | OsFBX119 - F-box domain containing protein | R04006388017 | C/A | 16.7 | 97.7 | 16.7 | 97.7 | 837/1137 | + | K > N | 279/378 |
6,388,020 | LOC_Os04g11660 | OsFBX119 - F-box domain containing protein |  | A/G | 16.7 | 97.7 | 16.7 | 97.7 | 916/1766 | – |  |  |
6,388,038 | LOC_Os04g11660 | OsFBX119 - F-box domain containing protein |  | G/T | 13.5 | 100.0 | 0.0 | 100.0 | 898/1766 | – |  |  |
6,388,095 | LOC_Os04g11660 | OsFBX119 - F-box domain containing protein | R04006388095 | G/C | 10.8 | 100.0 | 0.0 | 100.0 | 759/1137 | + | D > E | 253/378 |
6,451,402 | LOC_Os04g11780 | resistance protein LR10 |  | C/A | 0.0 | 100.0 | 0.0 | 100.0 | 1110/1998 | – |  |  |
6,451,404 | LOC_Os04g11780 | resistance protein LR10 | R04006451404 | T/C | 0.0 | 100.0 | 0.0 | 100.0 | 1112/1998 | + | I > T | 371/665 |
6,451,423 | LOC_Os04g11780 | resistance protein LR10 |  | A/T | 0.0 | 100.0 | 0.0 | 100.0 | 1131/1998 | + | E > D | 377/665 |
6,451,424 | LOC_Os04g11780 | resistance protein LR10 | R04006451424 | C/A | 0.0 | 100.0 | 0.0 | 100.0 | 1132/1998 | + | L > M | 378/665 |
6,451,469 | LOC_Os04g11780 | resistance protein LR10 | R04006451469 | G/A | 2.9 | 100.0 | 2.9 | 100.0 | 1177/1998 | + | V > I | 393/665 |
6,451,485 | LOC_Os04g11780 | resistance protein LR10 | R04006451485 | A/G | 2.9 | 100.0 | 2.9 | 100.0 | 1193/1998 | + | K > R | 398/665 |
6,451,495 | LOC_Os04g11780 | resistance protein LR10 | R04006451495 | T/G | 2.9 | 100.0 | 2.9 | 100.0 | 1203/1998 | + | D > E | 401/665 |
6,455,216 | LOC_Os04g11790 | OsFBX120 - F-box domain containing protein |  | T/C | 25.0 | 98.3 | 0.0 | 95.8 | 827/1461 | – |  |  |
6,455,225 | LOC_Os04g11790 | OsFBX120 - F-box domain containing protein |  | C/T | 75.0 | 1.6 | 100.0 | 4.2 | 818/1461 | – |  |  |
6,593,508 | LOC_Os04g12010 | glycosyltransferase |  | G/T | 24.3 | 96.6 | 0.0 | 94.5 | 1455/1774 | – |  |  |
6,593,541 | LOC_Os04g12010 | glycosyltransferase |  | G/A | 22.2 | 96.7 | 0.0 | 94.8 | 1422/1774 | – |  |  |
6,659,796 | LOC_Os04g12110 | expressed protein |  | C/A | NA | NA | 100.0 | 0.0 | 1818/1839 | – |  |  |
6,659,820 | LOC_Os04g12110 | expressed protein |  | G/A | 75.9 | 0.0 | 75.9 | 0.0 | 1794/1839 | – |  |  |
6,659,826 | LOC_Os04g12110 | expressed protein |  | A/G | 100.0 | 11.1 | 100.0 | 11.1 | 1788/1839 | – |  |  |
6,659,838 | LOC_Os04g12110 | expressed protein |  | A/G | 100.0 | 11.1 | 100.0 | 11.1 | 1776/1839 | – |  |  |
6,659,844 | LOC_Os04g12110 | expressed protein | R04006659844 | C/A | 75.9 | 0.0 | 75.9 | 0.0 | 1770/1839 | + | R > S | 590/612 |
6,659,845 | LOC_Os04g12110 | expressed protein | R04006659845 | C/G | 75.9 | 0.0 | 75.9 | 0.0 | 1769/1839 | + | R > T | 590/612 |
6,659,847 | LOC_Os04g12110 | expressed protein |  | G/T | 75.5 | 0.0 | 75.5 | 0.0 | 1767/1839 | – |  |  |
6,659,872 | LOC_Os04g12110 | expressed protein | R04006659872 | C/T | 88.6 | 5.3 | 100.0 | 7.4 | 1742/1839 | + | C > Y | 581/612 |
6,659,873 | LOC_Os04g12110 | expressed protein | R04006659873 | A/T | 88.6 | 5.3 | 100.0 | 7.4 | 1741/1839 | + | C > S | 581/612 |
6,659,874 | LOC_Os04g12110 | expressed protein |  | A/G | 88.6 | 5.3 | 100.0 | 7.4 | 1740/1839 | – |  |  |
6,659,877 | LOC_Os04g12110 | expressed protein |  | A/C | 88.6 | 5.3 | 100.0 | 7.4 | 1737/1839 | – |  |  |
6,659,884 | LOC_Os04g12110 | expressed protein | R04006659884 | G/C | 89.1 | 5.3 | 100.0 | 7.4 | 1730/1839 | + | S > C | 577/612 |
6,659,915 | LOC_Os04g12110 | expressed protein | R04006659915 | T/C | 88.9 | 5.4 | 100.0 | 7.4 | 1699/1839 | + | I > V | 567/612 |
6,925,203 | LOC_Os04g12530 | amino acid transporter family protein | R04006925203 | T/G | 0.0 | 80.0 | 0.0 | 80.0 | 404/612 | + | D > A | 135/203 |
6,925,208 | LOC_Os04g12530 | amino acid transporter family protein |  | C/G | NA | NA | 0.0 | 75.0 | 399/612 | – |  |  |
6,925,211 | LOC_Os04g12530 | amino acid transporter family protein |  | C/G | NA | NA | 0.0 | 71.4 | 396/612 | – |  |  |
6,968,050 | LOC_Os04g12580 | receptor-like protein kinase (OsLecRK3) | OsLecRK3-SNP | A/G | NA | NA | 0.0 | 100.0 | 990/2346 | – |  |  |
6,977,171 | LOC_Os04g12600 | receptor-like protein kinase |  | G/A | 96.6 | 0.0 | 96.6 | 0.0 | 2079/2415 | – |  |  |
6,978,761 | LOC_Os04g12600 | receptor-like protein kinase |  | C/T | 100.0 | 0.0 | 100.0 | 0.0 | 489/2415 | – |  |  |