Table 4 Functional KASP markers
From: Development of a core SNP arrays based on the KASP method for molecular breeding of rice
Marker | Chromosome | Physical location | Polymorphic type | Gene | Trait |
|---|---|---|---|---|---|
SK06.1765761 | 6 | 1,765,761 | G/T | GBSSI/Wx | amylose content |
SK06.1768006 | 6 | 1,768,006 | A/C | GBSSI/Wx | amylose content |
SK06.1768997 | 6 | 1,768,997 | C/T | GBSSI/Wx | amylose content |
SK06.6752887 | 6 | 6,752,887 | GC/TT | SSIIa/ALK | gelatinization temperature |
SK06.6752756 | 6 | 6,752,756 | A/G | SSIIa/ALK | gelatinization temperature |
SK08.20382857 | 8 | 20,382,857 | AAAAGATTATGGC/TATAT | Badh2/fgr | grain fragrant |
SK08.8008549 | 8 | 8,008,549 | A/C | fgr | grain fragrant |
SK08.5140824 | 8 | 5,140,824 | C/T | GPT1 | amylose content |
SK12.10607554 | 12 | 10,607,554 | G/T | Pita | blast resistance |
SK05.3340204 | 5 | 3,340,204 | A/T | Chalk5 | chalkiness |
SK10.18835485 | 10 | 18,835,485 | A/C | Rf4 | fertility |
SK11.27979265 | 11 | 27,979,265 | G/T | Pik | blast resistance |
SK06.10389729 | 6 | 10,389,729 | CAGGAAT/TGTTATT | Pi2 | blast resistance |
SK03.16733441 | 3 | 16,733,441 | A/C | GS3 | grain length |