Skip to main content

Table 1 Candidate SNPs chosen for KASP assays

From: Development of a core SNP arrays based on the KASP method for molecular breeding of rice

Subset Characters of SNPs No. of SNPs No. of assay successfully-designed No. of core SNPs Assay design success rate
1 Subgrouping or quality control related 61 59 57 96.7
2 Indica/Indica variation related 64 62 60 96.8
3 SNPs with high polymorphism information content (PIC) 53 52 51 98.1
4 Functional nucleotide polymorphisms (FNPs) 21 18 14 85.7
5 Targeting site of cloned genes 95 90 86 94.7
6 SNPs overlapped gene interval 173 156 113 90.1
7 Reliable SNP in GWAS 33 32 31 97.0
8 Gap filling SNP 96 96 55 100.0
  Total 596 565 467 94.8