TY - JOUR AU - Al-Tamimi, N. AU - Brien, C. AU - Oakey, H. PY - 2016 DA - 2016// TI - Salinity tolerance loci revealed in rice using high-throughput non-invasive phenotyping JO - Nat Commun VL - 7 UR - https://doi.org/10.1038/ncomms13342 DO - 10.1038/ncomms13342 ID - Al-Tamimi2016 ER - TY - JOUR AU - Asch, F. AU - Dingkuhn, M. AU - Dörffling, K. AU - Miezan, K. PY - 2000 DA - 2000// TI - Leaf K / Na ratio predicts salinity induced yield loss in irrigated rice JO - Euphytica VL - 113 UR - https://doi.org/10.1023/A:1003981313160 DO - 10.1023/A:1003981313160 ID - Asch2000 ER - TY - JOUR AU - Atieno, J. AU - Li, Y. AU - Langridge, P. PY - 2017 DA - 2017// TI - Exploring genetic variation for salinity tolerance in chickpea using image-based phenotyping JO - Sci Rep VL - 7 UR - https://doi.org/10.1038/s41598-017-01211-7 DO - 10.1038/s41598-017-01211-7 ID - Atieno2017 ER - TY - JOUR AU - Atwell, B. J. AU - Wang, H. AU - Scafaro, A. P. PY - 2014 DA - 2014// TI - Could abiotic stress tolerance in wild relatives of rice be used to improve Oryza sativa? JO - Plant Sci VL - 215–216 UR - https://doi.org/10.1016/j.plantsci.2013.10.007 DO - 10.1016/j.plantsci.2013.10.007 ID - Atwell2014 ER - TY - JOUR AU - Ballini, E. AU - Berruyer, R. AU - Morel, J. B. PY - 2007 DA - 2007// TI - Modern elite rice varieties of the “green revolution” have retained a large introgression from wild rice around the Pi33 rice blast resistance locus JO - New Phytol VL - 175 UR - https://doi.org/10.1111/j.1469-8137.2007.02105.x DO - 10.1111/j.1469-8137.2007.02105.x ID - Ballini2007 ER - TY - JOUR AU - Berger, B. AU - Bas De Regt, M. T. PY - 2012 DA - 2012// TI - High-throughput phenotyping in plants shoots JO - Methods Mol Biol VL - 918 UR - https://doi.org/10.1007/978-1-61779-995-2_2 DO - 10.1007/978-1-61779-995-2_2 ID - Berger2012 ER - TY - JOUR AU - Brar, D. S. AU - Khush, G. S. PY - 1997 DA - 1997// TI - Alien introgression in rice JO - Plant Mol Biol VL - 35 UR - https://doi.org/10.1023/A:1005825519998 DO - 10.1023/A:1005825519998 ID - Brar1997 ER - TY - STD TI - Brien, C. J. (2018) dae: Functions useful in the design and ANOVA of experiments. Version 3.0-16 ID - ref8 ER - TY - JOUR AU - Brozynska, M. AU - Copetti, D. AU - Furtado, A. PY - 2016 DA - 2016// TI - Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice JO - Plant Biotech J VL - 15 ID - Brozynska2016 ER - TY - STD TI - Butler DG, Cullis BR, Gilmour AR, Gogel BJ (2009) Analysis of Mixed Models for S language environments: ASReml-R reference manual. Brisbane, DPI Publications ID - ref10 ER - TY - JOUR AU - Byrt, C. S. AU - Platten, J. D. AU - Spielmeyer, W. PY - 2007 DA - 2007// TI - HKT1;5-like cation transporters linked to Na+ exclusion loci in wheat, Nax2 and Kna1 JO - Plant Physiol VL - 143 UR - https://doi.org/10.1104/pp.106.093476 DO - 10.1104/pp.106.093476 ID - Byrt2007 ER - TY - STD TI - Campbell MT, Du Q, Liu K (2017) A comprehensive image-based phenomic analysis reveals the complex genetic architecture of shoot growth dynamics in rice. Plant Genome 10:2 ID - ref12 ER - TY - STD TI - Campbell MT, Knecht AC, Berger B (2015) Integrating image-based phenomics and association analysis to dissect the genetic architecture of temporal salinity responses in rice. Plant Physiol 168:1476–1489 ID - ref13 ER - TY - JOUR AU - Davenport, R. J. AU - Muñoz-Mayor, A. AU - Jha, D. PY - 2007 DA - 2007// TI - The Na+ transporter AtHKT1;1 controls retrieval of Na+ from the xylem in Arabidopsis JO - Plant Cell Environ VL - 30 UR - https://doi.org/10.1111/j.1365-3040.2007.01637.x DO - 10.1111/j.1365-3040.2007.01637.x ID - Davenport2007 ER - TY - JOUR AU - Flowers, T. J. PY - 2004 DA - 2004// TI - Improving crop salt tolerance JO - J Exp Bot VL - 55 UR - https://doi.org/10.1093/jxb/erh003 DO - 10.1093/jxb/erh003 ID - Flowers2004 ER - TY - STD TI - Fukuda A, Nakamura A, Tagiri A (2004) Function, intracellular localization and the importance in salt tolerance of a vacuolar Na+/H+ antiporter from rice. Plant Cell Physiol 45:146–159 ID - ref16 ER - TY - JOUR AU - Garciadeblás, B. AU - Senn, M. E. AU - Bañuelos, M. A. AU - Rodríguez-Navarro, A. PY - 2003 DA - 2003// TI - Sodium transport and HKT transporters: the rice model JO - Plant J VL - 34 UR - https://doi.org/10.1046/j.1365-313X.2003.01764.x DO - 10.1046/j.1365-313X.2003.01764.x ID - Garciadeblás2003 ER - TY - JOUR AU - Grattan, S. R. AU - Shannon, M. C. AU - Roberts, S. R. PY - 2002 DA - 2002// TI - Rice is more sensitive to salinity than previously thought JO - Calif Agric VL - 56 UR - https://doi.org/10.3733/ca.v056n06p189 DO - 10.3733/ca.v056n06p189 ID - Grattan2002 ER - TY - JOUR AU - Greenway, H. AU - Munns, R. PY - 1980 DA - 1980// TI - Mechanisms of salt tolerance in nonhalophytes JO - Annu Rev Plant Biol VL - 31 UR - https://doi.org/10.1146/annurev.pp.31.060180.001053 DO - 10.1146/annurev.pp.31.060180.001053 ID - Greenway1980 ER - TY - JOUR AU - Gregorio, G. B. AU - Senadhira, D. PY - 1993 DA - 1993// TI - Genetic analysis of salinity tolerance in rice (Oryza sativa L.) JO - Theor Appl Genet VL - 86 UR - https://doi.org/10.1007/BF00222098 DO - 10.1007/BF00222098 ID - Gregorio1993 ER - TY - JOUR AU - Hairmansis, A. AU - Berger, B. AU - Tester, M. AU - Roy, S. J. PY - 2014 DA - 2014// TI - Image-based phenotyping for non-destructive screening of different salinity tolerance traits in rice JO - Rice VL - 7 UR - https://doi.org/10.1186/s12284-014-0016-3 DO - 10.1186/s12284-014-0016-3 ID - Hairmansis2014 ER - TY - JOUR AU - Harris, B. N. AU - Sadras, V. O. AU - Tester, M. PY - 2010 DA - 2010// TI - A water-centred framework to assess the effects of salinity on the growth and yield of wheat and barley JO - Plant Soil VL - 336 UR - https://doi.org/10.1007/s11104-010-0489-9 DO - 10.1007/s11104-010-0489-9 ID - Harris2010 ER - TY - JOUR AU - Hauser, F. AU - Horie, T. PY - 2010 DA - 2010// TI - A conserved primary salt tolerance mechanism mediated by HKT transporters: a mechanism for sodium exclusion and maintenance of high K+/Na+ ratio in leaves during salinity stress JO - Plant Cell Environ VL - 33 UR - https://doi.org/10.1111/j.1365-3040.2009.02056.x DO - 10.1111/j.1365-3040.2009.02056.x ID - Hauser2010 ER - TY - JOUR AU - Henry, R. J. AU - Rice, N. AU - Waters, D. L. E. PY - 2010 DA - 2010// TI - Australian Oryza: utility and conservation JO - Rice VL - 3 UR - https://doi.org/10.1007/s12284-009-9034-y DO - 10.1007/s12284-009-9034-y ID - Henry2010 ER - TY - BOOK PY - 2013 DA - 2013// TI - Standard Evaluation System (SES) for Rice PB - International Rice Research Institute CY - Manila ID - ref25 ER - TY - JOUR AU - Islam, M. R. AU - Salam, M. A. AU - Hassan, L. AU - Collard, B. C. Y. AU - Singh, R. K. AU - Gregorio, G. B. PY - 2011 DA - 2011// TI - QTL mapping for salinity tolerance in rice JO - Physiol Mol Biol Plants VL - 23 ID - Islam2011 ER - TY - JOUR AU - Ismail, A. M. AU - Horie, T. PY - 2017 DA - 2017// TI - Molecular breeding approaches for improving salt tolerance JO - Annu Rev Plant Biol VL - 68 UR - https://doi.org/10.1146/annurev-arplant-042916-040936 DO - 10.1146/annurev-arplant-042916-040936 ID - Ismail2017 ER - TY - JOUR AU - Jacquemin, J. AU - Bhatia, D. AU - Singh, K. AU - Wing, R. A. PY - 2013 DA - 2013// TI - The international Oryza map alignment project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question JO - Curr Opin Plant Biol VL - 16 UR - https://doi.org/10.1016/j.pbi.2013.02.014 DO - 10.1016/j.pbi.2013.02.014 ID - Jacquemin2013 ER - TY - JOUR AU - Jena, K. K. AU - Jeung, J. U. AU - Lee, J. H. PY - 2006 DA - 2006// TI - High-resolution mapping of a new brown planthopper (BPH) resistance gene, Bph18(t), and marker-assisted selection for BPH resistance in rice (Oryza sativa L.) JO - Theor Appl Genet VL - 112 UR - https://doi.org/10.1007/s00122-005-0127-8 DO - 10.1007/s00122-005-0127-8 ID - Jena2006 ER - TY - JOUR AU - Jeung, J. U. AU - Kim, B. R. AU - Cho, Y. C. PY - 2007 DA - 2007// TI - A novel gene, Pi40(t), linked to the DNA markers derived from NBS-LRR motifs confers broad spectrum of blast resistance in rice JO - Theor Appl Genet VL - 115 UR - https://doi.org/10.1007/s00122-007-0642-x DO - 10.1007/s00122-007-0642-x ID - Jeung2007 ER - TY - JOUR AU - Khatun, S. AU - Flowers, T. J. PY - 1995 DA - 1995// TI - Effects of salinity on seed set in rice JO - Plant Cell Environ VL - 18 UR - https://doi.org/10.1111/j.1365-3040.1995.tb00544.x DO - 10.1111/j.1365-3040.1995.tb00544.x ID - Khatun1995 ER - TY - STD TI - Khush GS (1997) Origin, dispersal, cultivation and variation of rice. Plant Mol Biol 35:25–34 ID - ref32 ER - TY - STD TI - Khush GS (2005) What it will take to feed 5.0 billion rice consumers in 2030. Plant Mol Biol 59(1):–6 ID - ref33 ER - TY - JOUR AU - Krishnamurthy, P. AU - Ranathunge, K. AU - Franke, R. PY - 2009 DA - 2009// TI - The role of root apoplastic transport barriers in salt tolerance of rice (Oryza sativa L.) JO - Planta VL - 230 UR - https://doi.org/10.1007/s00425-009-0930-6 DO - 10.1007/s00425-009-0930-6 ID - Krishnamurthy2009 ER - TY - JOUR AU - Krishnamurthy, P. AU - Ranathunge, K. AU - Nayak, S. PY - 2011 DA - 2011// TI - Root apoplastic barriers block Na+ transport to shoots in rice (Oryza sativa L.) JO - J Exp Bot VL - 62 UR - https://doi.org/10.1093/jxb/err135 DO - 10.1093/jxb/err135 ID - Krishnamurthy2011 ER - TY - JOUR AU - Lang, N. AU - Li, Z. AU - Buu, B. PY - 2001 DA - 2001// TI - Microsatellite markers linked to salt tolerance in rice JO - Omonrice VL - 9 ID - Lang2001 ER - TY - JOUR AU - Lutts, S. AU - Kinet, J. M. AU - Bouharmont, J. PY - 1995 DA - 1995// TI - Changes in plant response to NaCl during development of rice (Oryza sativa L.) varieties differing in salinity resistance JO - J Exp Bot VL - 46 UR - https://doi.org/10.1093/jxb/46.12.1843 DO - 10.1093/jxb/46.12.1843 ID - Lutts1995 ER - TY - STD TI - Lutts S, Kinet JM, Bouharmont J (1996) NaCl-induced senescence in leaves of rice (Oryza sativa L.) cultivars differing in salinity resistance. Ann Bot 78:389–398 ID - ref38 ER - TY - JOUR AU - Mackinney, G. PY - 1941 DA - 1941// TI - Absorption of light by chlorophyll solutions JO - J Biol Chem VL - 140 ID - Mackinney1941 ER - TY - STD TI - Martinez-Atienza J, Jiang X, Garciadeblas B (2006) Conservation of the salt overly sensitive pathway in rice. Plant Physiol 143:1001–1012 ID - ref40 ER - TY - JOUR AU - Menguer, P. K. AU - Sperotto, R. A. AU - Ricachenevsky, F. K. PY - 2017 DA - 2017// TI - A walk on the wild side : Oryza species as source for rice abiotic stress tolerance JO - Genet Mol Biol VL - 40 UR - https://doi.org/10.1590/1678-4685-gmb-2016-0093 DO - 10.1590/1678-4685-gmb-2016-0093 ID - Menguer2017 ER - TY - JOUR AU - Morinaga, T. AU - Kuriyama, H. PY - 1960 DA - 1960// TI - Interspecific hybrids and genomic constitution of various species in the genus Oryza JO - Agric Hortic VL - 35 ID - Morinaga1960 ER - TY - STD TI - Multani DS, Jena KK, Brar DS, de los Reyes BG, Angeles ER, Khush GS (1994) Development of monosomic alien addition lines and introgression of genes from Oryza australiensis Domin. to cultivated rice O. sativa L. Theor Appl Genet 88:102–109 ID - ref43 ER - TY - JOUR AU - Munns, R. AU - James, R. A. AU - Gilliham, M. PY - 2016 DA - 2016// TI - Tissue tolerance: an essential but elusive trait for salt-tolerant crops JO - Funct Plant Biol VL - 43 UR - https://doi.org/10.1071/FP16187 DO - 10.1071/FP16187 ID - Munns2016 ER - TY - JOUR AU - Munns, R. AU - Tester, M. PY - 2008 DA - 2008// TI - Mechanisms of salinity tolerance JO - Annu Rev Plant Biol VL - 59 UR - https://doi.org/10.1146/annurev.arplant.59.032607.092911 DO - 10.1146/annurev.arplant.59.032607.092911 ID - Munns2008 ER - TY - JOUR AU - Nezu, M. AU - Katayama, T. C. AU - Kihara, H. PY - 1960 DA - 1960// TI - Genetic study of the genus Oryza. I. Crossability and chromosomal affinity among 17 species JO - Seiken Jiho VL - 11 ID - Nezu1960 ER - TY - JOUR AU - Ochiai, K. AU - Matoh, T. PY - 2002 DA - 2002// TI - Characterization of the Na+ delivery from roots to shoots in rice under saline stress: excessive salt enhances apoplastic transport in rice plants JO - Soil Sci Plant Nutr VL - 48 UR - https://doi.org/10.1080/00380768.2002.10409214 DO - 10.1080/00380768.2002.10409214 ID - Ochiai2002 ER - TY - JOUR AU - Qadir, M. AU - Quillérou, E. AU - Nangia, V. PY - 2014 DA - 2014// TI - Economics of salt-induced land degradation and restoration JO - Nat Resour Forum VL - 38 UR - https://doi.org/10.1111/1477-8947.12054 DO - 10.1111/1477-8947.12054 ID - Qadir2014 ER - TY - STD TI - R Core Team (2018) R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. ID - ref49 ER - TY - JOUR AU - Rahman, M. L. AU - Jiang, W. AU - Chu, S. H. PY - 2009 DA - 2009// TI - High-resolution mapping of two rice brown planthopper resistance genes, Bph20(t) and Bph21(t), originating from Oryza minuta JO - Theor Appl Genet VL - 119 UR - https://doi.org/10.1007/s00122-009-1125-z DO - 10.1007/s00122-009-1125-z ID - Rahman2009 ER - TY - JOUR AU - Ren, Z. -. H. AU - Gao, J. -. P. AU - Li, L. PY - 2005 DA - 2005// TI - A rice quantitative trait locus for salt tolerance encodes a sodium transporter JO - Nat Genet VL - 37 UR - https://doi.org/10.1038/ng1643 DO - 10.1038/ng1643 ID - Ren2005 ER - TY - JOUR AU - Sabouri, H. AU - Sabouri, A. PY - 2008 DA - 2008// TI - New evidence of QTLs attributed to salinity tolerance in JO - African J Biotechnol VL - 7 ID - Sabouri2008 ER - TY - JOUR AU - Scafaro, A. P. AU - Gallé, A. AU - Rie, J. PY - 2016 DA - 2016// TI - Heat tolerance in a wild Oryza species is attributed to maintenance of rubisco activation by a thermally stable rubisco activase ortholog JO - New Phytol VL - 211 UR - https://doi.org/10.1111/nph.13963 DO - 10.1111/nph.13963 ID - Scafaro2016 ER - TY - JOUR AU - Scafaro, A. P. AU - Haynes, P. A. AU - Atwell, B. J. PY - 2010 DA - 2010// TI - Physiological and molecular changes in Oryza meridionalis ng., a heat-tolerant species of wild rice JO - J Exp Bot VL - 61 UR - https://doi.org/10.1093/jxb/erp294 DO - 10.1093/jxb/erp294 ID - Scafaro2010 ER - TY - JOUR AU - Shi, H. AU - Quintero, F. J. AU - Pardo, J. M. AU - Zhu, J. K. PY - 2002 DA - 2002// TI - The putative plasma membrane Na+/H+ antiporter SOS1 controls long-distance Na+ transport in plants JO - Plant Cell VL - 14 UR - https://doi.org/10.1105/tpc.010371 DO - 10.1105/tpc.010371 ID - Shi2002 ER - TY - JOUR AU - Stein, J. C. AU - Yu, Y. AU - Copetti, D. PY - 2018 DA - 2018// TI - Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza JO - Nat Genet VL - 50 UR - https://doi.org/10.1038/s41588-018-0040-0 DO - 10.1038/s41588-018-0040-0 ID - Stein2018 ER - TY - JOUR AU - Suh, J. P. AU - Roh, J. H. AU - Cho, Y. C. PY - 2009 DA - 2009// TI - The pi40 gene for durable resistance to rice blast and molecular analysis of pi40-advanced backcross breeding lines JO - Phytopathology VL - 99 UR - https://doi.org/10.1094/PHYTO-99-3-0243 DO - 10.1094/PHYTO-99-3-0243 ID - Suh2009 ER - TY - JOUR AU - Suzuki, K. AU - Costa, A. AU - Nakayama, H. PY - 2016 DA - 2016// TI - OsHKT2;2/1-mediated Na+ influx over K+ uptake in roots potentially increases toxic Na+ accumulation in a salt-tolerant landrace of rice Nona Bokra upon salinity stress JO - J Plant Res VL - 129 UR - https://doi.org/10.1007/s10265-015-0764-1 DO - 10.1007/s10265-015-0764-1 ID - Suzuki2016 ER - TY - JOUR AU - Takagi, H. AU - Tamiru, M. AU - Abe, A. PY - 2015 DA - 2015// TI - MutMap accelerates breeding of a salt-tolerant rice cultivar JO - Nat Biotechnol VL - 33 UR - https://doi.org/10.1038/nbt.3188 DO - 10.1038/nbt.3188 ID - Takagi2015 ER - TY - STD TI - Thomson MJ, de Ocampo M, Egdane J (2010) Characterizing the Saltol quantitative trait locus for salinity tolerance in rice. Rice 3:148–160 ID - ref60 ER - TY - JOUR AU - Wang, W. AU - Vinocur, B. AU - Altman, A. PY - 2003 DA - 2003// TI - Plant responses to drought, salinity and extreme temperatures: towards genetic engineering for stress tolerance JO - Planta VL - 218 UR - https://doi.org/10.1007/s00425-003-1105-5 DO - 10.1007/s00425-003-1105-5 ID - Wang2003 ER - TY - STD TI - Wickham H (2009) ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics. R package version 2.2.1. ID - ref62 ER - TY - JOUR AU - Yadav, R. AU - Flowers, T. J. AU - Yeo, A. PY - 1996 DA - 1996// TI - The involvement of the transpirational bypass flow in sodium uptake by high- and low-sodium-transporting lines of rice developed through intravarietal selection JO - Plant Cell Environ VL - 19 UR - https://doi.org/10.1111/j.1365-3040.1996.tb00255.x DO - 10.1111/j.1365-3040.1996.tb00255.x ID - Yadav1996 ER - TY - JOUR AU - Yao, M. Z. AU - Wang, J. F. AU - Chen, H. Y. AU - Zha, H. Q. AU - Zhang, H. S. PY - 2005 DA - 2005// TI - Inheritance and QTL mapping of salt tolerance in rice JO - Rice Sci VL - 12 ID - Yao2005 ER - TY - JOUR AU - Yeo, A. R. AU - Yeo, M. E. AU - Flowers, S. A. AU - Flowers, T. J. PY - 1990 DA - 1990// TI - Screening of rice (Oryza sativa L.) genotypes for physiological characters contributing to salinity resistance, and their relationship to overall performance JO - Theor Appl Genet VL - 79 UR - https://doi.org/10.1007/BF01186082 DO - 10.1007/BF01186082 ID - Yeo1990 ER - TY - JOUR AU - Yeo, A. R. AU - Yeo, M. E. AU - Flowers, T. J. PY - 1987 DA - 1987// TI - The contribution of an apoplastic pathway to sodium uptake by rice roots in saline conditions JO - J Exp Bot VL - 38 UR - https://doi.org/10.1093/jxb/38.7.1141 DO - 10.1093/jxb/38.7.1141 ID - Yeo1987 ER - TY - STD TI - Zeng L, Shannon MC, Grieve CM (2002) Evaluation of salt tolerance in rice genotypes by multiple agronomic parameters. Euphytica:235–245 ID - ref67 ER - TY - JOUR AU - Zhu, Q. AU - Zheng, X. AU - Luo, J. PY - 2007 DA - 2007// TI - Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msm005 DO - 10.1093/molbev/msm005 ID - Zhu2007 ER -