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Table 2 Interspersed repeat sequence analysis of divergent structures in the Pi54 locus

From: Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza

Species Length (bp) Percentage of sequence
Retroelements DNA transposons Unclassified Total interspersed repeats
O. meridionalis (AA) 112,929 9.34% 21.09% 6.81% 37.24%
O. rufipogon (AA) 92,702 13.45% 21.07% 18.34% 52.86%
Nipponbare (AA) 98,798 12.73% 21.35% 21.56% 55.64%
O. brachyantha (FF) 32,280 7.59% 2.37% 0.94% 10.90%
O. punctata (BB) 22,183 1.58% 1.59% 0.00% 3.17%
Sasanishiki (AA) 25,061 27.36% 5.99% 0.09% 33.43%
O. nivara (AA) 25,651 25.92% 5.11% 0.63% 31.66%
O. glumaepatula (AA) 22,674 18.87% 5.45% 0.10% 24.42%
O. barthii (AA) 16,743 0.00% 19.76% 1.84% 21.60%
O. glaberrima (AA) 26,686 6.76% 39.67% 2.13% 48.56%