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Table 2 Interspersed repeat sequence analysis of divergent structures in the Pi54 locus

From: Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza

Species

Length (bp)

Percentage of sequence

Retroelements

DNA transposons

Unclassified

Total interspersed repeats

O. meridionalis (AA)

112,929

9.34%

21.09%

6.81%

37.24%

O. rufipogon (AA)

92,702

13.45%

21.07%

18.34%

52.86%

Nipponbare (AA)

98,798

12.73%

21.35%

21.56%

55.64%

O. brachyantha (FF)

32,280

7.59%

2.37%

0.94%

10.90%

O. punctata (BB)

22,183

1.58%

1.59%

0.00%

3.17%

Sasanishiki (AA)

25,061

27.36%

5.99%

0.09%

33.43%

O. nivara (AA)

25,651

25.92%

5.11%

0.63%

31.66%

O. glumaepatula (AA)

22,674

18.87%

5.45%

0.10%

24.42%

O. barthii (AA)

16,743

0.00%

19.76%

1.84%

21.60%

O. glaberrima (AA)

26,686

6.76%

39.67%

2.13%

48.56%