From: A northern Chinese origin of Austronesian agriculture: new evidence on traditional Formosan cereals
Sample | Sub-spp | Awn lengtha | Shattering degreeb | Prog1 | OsLG1 | Sh4 | An1 | An2 (LABA1) | RC | Sh1 |
---|---|---|---|---|---|---|---|---|---|---|
SNP | SNP | SNP | TE ins or 1-bp del | 1-bp del or 29-bp ins | 14-bp del | SNP | ||||
Bohai | J | +++ | +++ | T | A | T | TE ins | 29-bp ins | 14-bp del | G |
Chuan No4 | J | +++ | ++ | T | A | T | TE ins | 29-bp ins | 14-bp del | G |
Kabotsumame | J | +++ | +++ | T | A | T | TE ins | 29-bp ins | 14-bp del | G |
Matara | J | ++ | +++ | T | A | T | TE ins | 29-bp ins | 14-bp del | G |
Montana | J | – | ++ | T | A | T | TE ins | Both | 14-bp del | G |
Muteka | J | ++ | ++ | T | A | T | TE ins | 29-bp ins | No deletion | G |
Nakabo | J | – | ++ | T | A | T | TE ins | 29-bp ins | 14-bp del | G |
Nakairitsu | J | ++ | ++ | T | A | T | TE ins | 29-bp ins | 14-bp del | G |
Purahaitairin | J | + | + | T | A | T | TE ins | 29-bp ins | 14-bp del | G |
RuiYan | J | ++ | ++ | T | A | T | TE ins | 29-bp ins | No deletion | G |
Nipponbare | J | – | – | T | A | T | TE ins | 29-bp ins | 14-bp del | T |
Tainung 67 | J | – | + | T | A | T | TE ins | 29-bp ins | 14-bp del | G |
Nobohai | I | – | + | T | A | T | 1-bp del | Both | 14-bp del | G |
Parahainakoru | I | – | + | T | A | T | Both | Both | 14-bp del | G |
Ragarasu | I | – | + | T | A | T | 1-bp del | Both | 14-bp del | G |
Tangengenrankatsu | I | – | ++ | T | A | T | 1-bp del | Both | 14-bp del | G |
Tapopuri | I | – | ++ | T | A | T | 1-bp del | Both | 14-bp del | G |
IR64 | I | – | + | T | A | T | TE ins | Both | 14-bp del | G |
Kasalath | I | +++ | +++ | T | A | T | Both | Both | No deletion | G |
Wild rice | – | +++++ | +++++ | A | G | G | Neither | Neither | No deletion | G |