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Table 3 Summary of sequence changes in early domestication-related genes

From: A northern Chinese origin of Austronesian agriculture: new evidence on traditional Formosan cereals

Sample Sub-spp Awn lengtha Shattering degreeb Prog1 OsLG1 Sh4 An1 An2 (LABA1) RC Sh1
    SNP SNP SNP TE ins or 1-bp del 1-bp del or 29-bp ins 14-bp del SNP
Bohai J +++ +++ T A T TE ins 29-bp ins 14-bp del G
Chuan No4 J +++ ++ T A T TE ins 29-bp ins 14-bp del G
Kabotsumame J +++ +++ T A T TE ins 29-bp ins 14-bp del G
Matara J ++ +++ T A T TE ins 29-bp ins 14-bp del G
Montana J ++ T A T TE ins Both 14-bp del G
Muteka J ++ ++ T A T TE ins 29-bp ins No deletion G
Nakabo J ++ T A T TE ins 29-bp ins 14-bp del G
Nakairitsu J ++ ++ T A T TE ins 29-bp ins 14-bp del G
Purahaitairin J + + T A T TE ins 29-bp ins 14-bp del G
RuiYan J ++ ++ T A T TE ins 29-bp ins No deletion G
Nipponbare J T A T TE ins 29-bp ins 14-bp del T
Tainung 67 J + T A T TE ins 29-bp ins 14-bp del G
Nobohai I + T A T 1-bp del Both 14-bp del G
Parahainakoru I + T A T Both Both 14-bp del G
Ragarasu I + T A T 1-bp del Both 14-bp del G
Tangengenrankatsu I ++ T A T 1-bp del Both 14-bp del G
Tapopuri I ++ T A T 1-bp del Both 14-bp del G
IR64 I + T A T TE ins Both 14-bp del G
Kasalath I +++ +++ T A T Both Both No deletion G
Wild rice +++++ +++++ A G G Neither Neither No deletion G
  1. aAwn length: ++++, > 10 cm; +++, 5–10 cm; ++, 2–3 cm; −-, awnless
  2. bShattering: the number of 『+』 signs represents the degree of shattering