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Table 6 Significant differentially Expressed Transcripts Mapped in each of the QTL Regions

From: Genetic analysis for the grain number heterosis of a super-hybrid rice WFYT025 combination using RNA-Seq

Trait

QTL

Chr

Intervel

DGHP

GPP

qGP-1a

1

RM1-R753

Os01G0135700, Os01G0150800

NGP

qNG-1

1

RG374-RG394

Os01G0788400

NSP

qSSBP1–1

1

C86-C2340

Os01G0846300

GW

qgw362

2

C1445-C560

Os02G0697400, Os02G0771600

GPP

qGP3–1

3

G249-RG418

Os03G0760200,Os03G0762400,Os03G0797800, Os03G0856700

SNPP

qSNP-3b

3

RM227-RM85

Os03G0856700

GW

qGW3.1

3

RZ672-RZ474

Os03G0423300, Os03G0645900

GW

qGwt4a

4

RG788-RG190

Os04G0229100

SNPP

qSNP-4a

4

RM401-RM335

Os04G0229100,Os04G0474800,Os04G0486950,

GPP

qGPP-4

4

RZ569-RZ565

Os04G0492800,Os04G0498700,Os04G0518100, Os04G0522500

Os04G0535600,Os04G0556500,Os04G0565200, Os04G0578400,Os04G0608300,Os04G0611700, Os04G0611800,Os04G0618700

SNPP

qSNP4–1

4

RM303-RM255

Os04G0578400,Os04G0608300

GW

qKw5

5

RG182-RG13

Os05G0374200, Os05G0380900

SD

qSD-15

5

RG13-RG346

Os05G0475400,Os05G0551700,Os05G0408900

GW

qGw-6

6

C235-G294

Os06G0347100, Os06G0486900

SP

qSP6–1

6

RG138-RZ398

Os06G0185100

GPP

qGP-6

6

RZ667-RG424

Os06G0347100

SSP

qSPN-6

6

C236-G294

Os06G0486900

GW

qGw7

7

R1440-RG128

Os07G0154100, Os07G0155600

YPP

yd7a

7

R1440-RG128

Os07G0154100, Os07G0155600

GPP

qGP-7a

7

R1440-RG128

Os07G0154100

SSD

qSSD-10

10

RG257-RZ583

Os10G0419400,Os10G0422200,Os10G0430200, Os10G0472900

NFPB

qNFPB-11

11

RM286-RM332

Os11G0141400, Os11G0152700