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Table 6 Occurrence of WAB 56–104 specific genes in NU varieties and CG 14

From: Comparative whole genome re-sequencing analysis in upland New Rice for Africa: insights into the breeding history and respective genome compositions

Category Gene identifier Functional annotation Gene occurrence
Gene of BLAST hit in Swiss prot Species of BLAST hit in Swiss-prot NU3 NU4 NU5 NU7 CG14 Remarks
Disease g13.t1 Putative disease resistance protein RGA4 Solanum bulbocastanum No No No Yes No WAB 56–104 allele
g51.t1 Putative disease resistance RPP13-like protein 3 Arabidopsis thaliana Yes Yes Yes No No WAB 56–104 allele
g98.t1 Disease resistance protein RPP13 Arabidopsis thaliana Yes Yes No Yes Yes WAB 56–104 allele
g108.t1 Putative disease resistance RPP13-like protein 1 Arabidopsis thaliana No No No No Yes Polymorphic in parents
g342.t1 Chitin elicitor-binding protein Oryza sativa Yes Yes No No No WAB 56–104 allele
g632.t1 Putative disease resistance RPP13-like protein 2 Arabidopsis thaliana Yes Yes No Yes No WAB 56–104 allele
Receptor g85.t1 Wall-associated receptor kinase-like 18 Arabidopsis thaliana Yes Yes Yes No Yes Both parental allele
g115.t1 Wall-associated receptor kinase-like 18 Arabidopsis thaliana Yes Yes Yes No Yes Both parental allele
g227.t1 Wall-associated receptor kinase 2 Arabidopsis thaliana Yes Yes No Yes No WAB 56–104 allele
g162.t1 Receptor-like protein 12 Arabidopsis thaliana Yes Yes Yes No Yes WAB 56–104 allele in NU3 and NU4.CG 14 allele in NU5.
g418.t1 G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 Oryza sativa Yes Yes No No No WAB 56–104 allele
Others g173.t1 11-oxo-beta-amyrin 30-oxidase Glycyrrhiza uralensis No No Yes No Yes Unspecified
g268.t1 Uncharacterized protein Arabidopsis thaliana Yes Yes No Yes No WAB 56–104 allele in NU3 and NU4. Unspecified in NU7.
g338.t1 F-box/FBD/LRR-repeat protein Arabidopsis thaliana No No No No Yes Polymorphic in parents
g361.t1 Cytochrome P450 87A3 Oryza sativa Yes Yes No Yes No Both parental allele
g427.t1 UPF0481 protein Arabidopsis thaliana Yes Yes No No No WAB 56–104 allele
g453.t1 Tetraspanin-8 Arabidopsis thaliana Yes Yes No No No WAB 56–104 allele
g500.t1 Protein Brevis radix-like 2 Arabidopsis thaliana Yes Yes Yes No Yes WAB 56–104 allele
g517.t1 UDP-glycosyltransferase 76E11 Arabidopsis thaliana Yes Yes Yes No Yes WAB 56–104 allele
g597.t1 Basic blue protein Cucumis sativus Yes Yes Yes No Yes WAB 56–104 allele
g643.t1 Autonomous transposable element EN-1 mosaic protein Zea mays No No Yes No No WAB 56–104 allele