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Table 3 Structural variants in the parental lines and Nipponbare

From: Comparative whole genome re-sequencing analysis in upland New Rice for Africa: insights into the breeding history and respective genome compositions

Comparison Interchromosomal translocation breakend Inversion*1 Tandem duplication*2 Long deletion*3 Long insertion*3
WAB 56–104 vs. CG14 6807 283 244 3741 584
CG14 vs. WAB56–104 1238 46 76 336 54
Nippobare vs. WAB 56–104 3346 165 154 2222 282
Nippobare vs. CG14 9176 381 316 6071 857
  1. *1 Inversion between 100 bp to 10 Mbp
  2. *2 Tandem duplication between 100 bp to 1 Mbp
  3. *3 Insertion and deletion between 50 bp to 1 Mbp