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Rice

Table 3 Structural variants in the parental lines and Nipponbare

From: Comparative whole genome re-sequencing analysis in upland New Rice for Africa: insights into the breeding history and respective genome compositions

Comparison

Interchromosomal translocation breakend

Inversion*1

Tandem duplication*2

Long deletion*3

Long insertion*3

WAB 56–104 vs. CG14

6807

283

244

3741

584

CG14 vs. WAB56–104

1238

46

76

336

54

Nippobare vs. WAB 56–104

3346

165

154

2222

282

Nippobare vs. CG14

9176

381

316

6071

857

  1. *1 Inversion between 100 bp to 10 Mbp
  2. *2 Tandem duplication between 100 bp to 1 Mbp
  3. *3 Insertion and deletion between 50 bp to 1 Mbp
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