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Table 2 Polymorphic sites between WAB 56–104 and CG 14

From: Comparative whole genome re-sequencing analysis in upland New Rice for Africa: insights into the breeding history and respective genome compositions

Chr Nucleotide polymorphism Insertion Deletion Total
SNP MNP WAB56–104 CG 14 WAB56–104 CG 14
1 360,381 11,386 1972 20,132 2804 24,478 49,386
2 316,206 10,336 1564 17,498 2320 21,101 42,483
3 306,733 9299 1293 16,964 1879 20,338 40,474
4 270,022 9601 1370 14,362 2061 17,316 35,109
5 251,323 8021 1377 13,075 2055 15,560 32,067
6 271,081 9447 1413 14,354 1997 17,557 35,321
7 254,203 8756 899 14,537 1314 17,184 33,934
8 221,116 7317 1131 11,605 1632 14,365 28,733
9 190,775 6350 666 10,347 893 12,284 24,190
10 201,301 7146 1771 9125 2600 11,457 24,953
11 238,964 8611 1884 11,917 2360 14,295 30,456
12 203,812 7230 1527 10,421 2084 12,631 26,663
Un 538 9 3 20 5 32 60
Sy 2363 59 7 113 2 119 241
Total 3,088,818 103,568 16,877 164,470 24,006 198,717 404,070