Genomic selection of agronomic traits in hybrid rice using an NCII population

Rice

Table 1 Average predictabilities and their standard deviations (sd) for eight traits using six prediction methods

Trait	Heritability	GBLUP		PLS		LASSO		BayesB		SVM		RKHS
Trait		mean	sd	mean	sd	mean	sd	mean	sd	mean	sd	mean	sd
GY	0.3031	0.4057	0.0102	0.3832	0.0125	0.3923	0.0132	0.4095	0.0117	0.4032	0.012	0.4041	0.0122
TGW	0.8501	0.8833	0.0025	0.8735	0.0037	0.8821	0.0024	0.8819	0.0035	0.8791	0.0037	0.8829	0.0029
PN	0.2550	0.4122	0.0122	0.3849	0.0141	0.4156	0.015	0.4189	0.011	0.3731	0.0125	0.3975	0.0114
PH	0.7501	0.8647	0.0041	0.8564	0.0048	0.8642	0.0038	0.8629	0.0046	0.8644	0.0064	0.8601	0.0043
SB	0.6676	0.7158	0.0072	0.7085	0.0121	0.7181	0.0061	0.7122	0.0076	0.6862	0.0112	0.715	0.0081
GN	0.6262	0.6488	0.0085	0.6356	0.0093	0.6445	0.0089	0.6451	0.0095	0.6197	0.0133	0.6478	0.0094
PL	0.7802	0.7919	0.0045	0.7897	0.0049	0.7922	0.0041	0.7887	0.0044	0.7957	0.0043	0.7894	0.0048
PB	0.6944	0.6736	0.0069	0.6613	0.0077	0.6857	0.0062	0.6739	0.0076	0.6761	0.0058	0.6746	0.0066

Abbreviations: GY Grain yield per plant, TGW Thousand-grain weight, PN Productive panicle number per plant, PH Plant height, SB Secondary branch number, GN Grain number per panicle, PL Panicle length, PB Primary branch number
Predictabilities are averaged over 20 cross-validation runs