Table 1 KASP SNP markers for specific gene target used for MABC for improving KDML105
From: Thai Hom Mali Rice: Origin and Breeding for Subsistence Rainfed Lowland Rice System
Traits | Marker Name | Chr. | QTL/gene | LGC codef |
|---|---|---|---|---|
Aroma | Aroma_2-3e | 8 | OsBADH2 | 002–0829.1 |
Amylose content (AC) | wx_5UTR_G/Ta | 6 | GBSS | 002–0052.1 |
Gelatinization temperature (GT) | ALK_ex8_SNP_GC/TTa | 6 | SSIIa | 002–0049.1 |
Bacterial leaf blight (BLB) | xa5a | 5 | xa5 | 002–0775.1 |
Bacterial leaf blight (BLB) | SNP_P100 Xa21e | 11 | Xa21 | 002–0998.1 |
Brown planthopper (BPH) | OsSTPS2_21bp_delb | 4 | OsSTPS2 | 002–0120.1 |
Brown planthopper (BPH) | OsLecRK3_QBPHRe | 4 | OsLecRK3 | 002–0263.1 |
Brown planthopper (BPH) | Bph32_2_1223332e | 6 | BPH 32 | Â |
Blast (BL) | BLch11-Pikm-2c,d | 11 | NB-ARC domain containing protein | 002–0754.1 |
Blast (BL) | TBGI055578_TC_Chr1a | 1 | secretory carrier-associated membrane protein | 002–0768.1 |
Blast (BL) | TBGI055841a | 1 | hypothetical protein | 002–0819.1 |
Blast (BL) | TBGI453126a | 11 | NBS-LRR disease resistance protein | 002–0820.1 |
Blast (BL) | TBGI453598a | 11 | retrotransposon protein | 002–0821.1 |
Blast (BL) | TBGI454069a | 11 | receptor kinase-like protein | 002–0822.1 |
Blast (BL) | TBGI454717a | 11 | C2H2 zinc finger protein | 002–0823.1 |
Blast (BL) | TBGI454800a | 11 | zinc finger, C3HC4 type | 002–0824.1 |
Submergence (SUB) | Sub1A_SNP1e | 9 | Sub1A | 002–0152.1 |
Submergence (SUB) | Sub1C_loci5a | 9 | Sub1C | 002–0995.1 |