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Rice
Fig. 3 | Rice

Fig. 3

From: QTL mapping and candidate gene analysis of peduncle vascular bundle related traits in rice by genome-wide association study

Fig. 3

Gene-based association analysis and haplotype analysis of targeted genes related to qLVN6. a Local Manhattan plot (top) and LD block (bottom) surrounding the peak on chromosome 6. Dashed lines indicate the candidate region for the peak. b Gene-based association analysis of targeted genes related to qLVN6. Each point is a gene indicated by one SNP having largest –log10 (P) value. Dash line show the threshold to determine significant SNP. c Exon-intron structure of Os06g0685700 and DNA polymorphism in that gene. d Boxplots for LVN based on the haplotypes (Hap) for Os06g0685700 in the whole, indica and japonica populations. The ** and *** suggest significance of ANOVA at P < 0.01 and P < 0.001, respectively. The letter on histogram (a, and b) indicate multiple comparisons result at the significant level 0.05. Green and red colors indicate in 2015 and 2016, respectively

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