Skip to main content

Table 2 Details of the differentially expressed TF genes and their corresponding fold change value (log2FC) under submergence in IR64 and IR64-Sub1

From: Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice

  Gene # Locus ID ver 7.0 Gene Description/TF Family Gene name og2FC
Genotype specific
differences
1 LOC_Os01g72370 Helix-loop-helix DNA-binding domain containing protein; bHLH OsIRO2/OsbHLH056 −0.64
2 LOC_Os10g25230 ZIM domain containing protein; Tify OsTIFY11e/OsZIM18/OsJAZ13 −0.50
3 LOC_Os10g25290 ZIM domaincontaining protein; Tify OsTIFY11d/OsJAZ12 −0.36
4 LOC_Os01g60640 WRKY21; WRKY OsWRKY21 −0.44
Submergence
responsive in IR64
1 LOC_Os07g22730 AP2 domain containing protein; AP2-EREBP OsERF136/AP2/EREBP#106 −0.19
2 LOC_Os05g27930 AP2 domain containing protein; AP2-EREBP OsERF042/AP2/EREBP#048/OsDREB2b −0.28
3 LOC_Os04g47059 bHLH OsbHLH16/OSB2 0.26
4 LOC_Os01g36220 bZIP transcription factor domain containing protein; bZIP OsbZIP4 0.31
5 LOC_Os02g35770 Homeobox associated leucine zipper; HB OsHox7 0.18
6 LOC_Os02g13800 HSF-type DNA binding domain containing protein; HSF OsHsfC2a/OsHsf-05 0.25
7 LOC_Os02g40530 MYB family transcription factor; MYB MYB/OsMPS −0.28
8 LOC_Os07g37210 MYB family transcription factor; MYB MYB/OsMyb7 0.17
9 LOC_Os11g47460 MYB family transcription factor; MYB MYB 0.16
10 LOC_Os06g51260 MYB family transcription factor; MYB-related MYB/ OsLHY-like_chr.6 0.36
11 LOC_Os01g47370 MYB family transcription factor; MYB-related MYB 0.20
12 LOC_Os08g06110 MYB family transcription factor; MYB-related MYB/OsCCA1/OsLHY/LHY-like_chr.8 0.33
13 LOC_Os07g26150 MYB family transcription factor; MYB-related MYB/Hsp40 0.18
14 LOC_Os04g41560 B-box zinc finger family protein; Orphans OsBBX11/OsSTO 0.21
15 LOC_Os08g08120 B-box zinc finger family protein; Orphans OsBBX24 0.21
16 LOC_Os09g25060 WRKY76; WRKY OsWRKY76 −0.31
17 LOC_Os03g08310 ZIM domain containing protein; Tify OsTIFY11a/OsJAZ9 −0.31
18 LOC_Os02g35329 RING-H2 finger protein ATL3F ATL3F/OsELF5 −0.28
19 LOC_Os07g43740 Zinc finger, C3HC4 type domain containing protein Zn finger 0.20
Common gene 1 LOC_Os01g19330 MYB family transcription factor; MYB MYB −0.394
−0.36
Submergence responsive in IR64 1 LOC_Os08g06120 B3 DNA binding domain containing protein; ABI3VP1 Similar to NGA1 (NGATHA1) −0.26
2 LOC_Os09g11480 AP2 domain containing protein; AP2-EREBP OsSUB1B/OsERF063/AP2/EREBP#166 −0.41
3 LOC_Os09g11460 AP2 domain containing protein; AP2-EREBP OsSUB1C/ OsERF73/AP2/EREBP#122 −0.23
4 LOC_Os07g47790 AP2 domain containing protein; AP2-EREBP OsERF067/AP2/EREBP#076 −0.22
5 LOC_Os03g22170 AP2 domain containing protein; AP2-EREBP OsERF066/AP2/EREBP#030 −0.31
6 LOC_Os01g54890 Ethylene-responsive transcription factor 2; AP2-EREBP OsERF922/AP2/EREBP#078 −0.21
7 LOC_Os01g64020 Transcription factor; bZIP OsLG2/OsbZIP11 −0.16
8 LOC_Os02g49230 CCT/B-box zinc finger protein; C2C2-CO-like OsBBX7 −0.17
−0.18
−0.20
9 LOC_Os01g74410 MYB family transcription factor; MYB OsMYB48–1 −0.23
−0.32
10 LOC_Os03g20090 MYB family transcription factor; MYB OsMYB2 −0.18
11 LOC_Os08g43550 MYB family transcription factor; MYB OsMYB7 −0.24
12 LOC_Os03g04900 MYB family transcription factor; MYB MYB −0.20
13 LOC_Os11g05614 No apical meristem protein; NAC OsONAC7/ONAC17/ONAC30/OsNAC111 −0.26
14 LOC_Os07g37920 No apical meristem protein; NAC OsSNAC/ONAC10/OsSTA199 −0.18
15 LOC_Os03g04070 No apical meristem protein; NAC OsANAC34/ONAC22 −0.21
16 LOC_Os01g66120 No apical meristem protein; NAC OsNAC6/SNAC2/NAC48 −0.26
17 LOC_Os01g10580 B-box zinc finger family protein; Orphans OsBBX1/OsDBB3c −0.22
18 LOC_Os12g10660 B-box zinc finger family protein; Orphans OsBBX30 −0.21
19 LOC_Os02g05470 CCT motif family protein; Orphans OsCCT03/OsCMF3 −0.43
20 LOC_Os07g07690 PHD-finger domain containing protein; PHD PHD −0.43
21 LOC_Os05g49620 WRKY19; WRKY OsWRKY19 −0.25
22 LOC_Os09g25070 WRKY62; WRKY OsWRKY62 −0.33
23 LOC_Os02g08440 WRKY71; WRKY WRKY71/OsEXB1 −0.25
24 LOC_Os09g30400 WRKY90; WRKY OsWRKY90 −0.18
25 LOC_Os06g03580 Zinc RING finger protein OsBBI1 −0.20
26 LOC_Os01g11460 Zinc finger, C3HC4 type domain containing protein Zn finger ATL2K −0.20