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Table 6 Markers significant in the HDRA japonica panel

From: Genome-wide association mapping for root cone angle in rice

Marker

QTL

Chr

Position 1

Position 2

p-value

q-value

Number obs.

minor allele

S01_01196103

qj01–3

1

1 196 103

 

9.68E-07

0.04

14

S01_22981270

qj01–1

1

22 981 270

23 571 718

1.29E-06

0.04

5

S01_27982591

qj01–4

1

27 982 591

 

2.30E-06

0.05

8

S01_41631488

qj01–5

1

41 631 488

 

4.07E-06

0.06

9

S02_24998179

qj02–3

2

24 998 179

 

3.04E-06

0.07

5

S03_22066093

qj03–1

3

22 066 093

 

6.27E-10

<0.01

9

S04_30759181

qj04–1

4

30 759 181

 

1.77E-06

0.04

11

S05_04237081

qj05–3

5

4 237 081

4 240 625

3.17E-06

0.06

5

S05_06615188

qj05–4

5

6 615 188

 

7.55E-07

0.05

5

S06_20926166

qj06–4

6

20 926 166

 

1.10E-07

0.02

5

S07_27039086

qj07–2

7

27 039 086

27 067 119

5.72E-07

0.04

6

S11_21915814

qj11–3

11

21 915 814

21 986 377

1.28E-06

0.04

5

S11_23438923

qj11–4

11

23 438 923

 

4.00E-06

0.07

6

S11_23640395

qj11–2

11

23 640 395

 

1.41E-06

0.04

5

S11_24364407

qj11–5

11

24 364 407

 

1.28E-06

0.04

6

S11_24388283

 

11

24 388 283

 

9.43E-07

0.05

7

S11_25610599

qj11–6

11

25 610 599

 

1.43E-07

0.01

8

S12_17977193

qj12–1

12

17 977 193

 

4.05E-06

0.07

12

S12_24921245

qj12–2

12

24 921 245

 

3.16E-06

0.06

6

  1. In bold, markers or intervals common with GBS ones