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Table 1 Characteristics of QTLs for mesocotyl and coleoptile length in 98 BILs

From: Mesocotyl Elongation is Essential for Seedling Emergence Under Deep-Seeding Condition in Rice

Locus a

Chr.

Nearest marker

Position

Replication b

LOD score c

R2 (%) d

Additive

effect

Positive allele e

qMel-1

1

R2414

39.6- Mb

Rep 2

3.44

13.89

4.34

K

qMel-3

3

R1618

30.7-Mb

Rep 1

12.09

37.56

6.41

K

  

R1618

30.7-Mb

Rep 2

7.18

26.97

6.46

K

qMel-6

6

R2123

11.68-Mb

Rep 2

2.81

8.28

3.89

N

qCol-3

3

C25

3.97-Mb

Rep 1

3.06

11.8

2.96

N

qCol-5

5

C597

0.26-Mb

Rep 1

3.20

12.0

2.70

N

  1. a QTLs were designated as “qMel chromosome number” and “qCol chromosome number”
  2. b QTLs were detected under soil conditions in two replications, respectively
  3. c Maximum LOD score over threshold significance level at P < 0.05
  4. d Proportion of the phenotypic variation explained by the nearest marker of QTL
  5. e K and N respectively represent the positive effects of QTL contributed by Kasalath and Nipponbare alleles