TY - JOUR AU - Chen, Y. AU - Sun, A. AU - Wang, M. AU - Zhu, Z. AU - Ouwerkerk, P. B. PY - 2014 DA - 2014// TI - Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice JO - Plant Mol Biol VL - 84 UR - https://doi.org/10.1007/s11103-013-0158-5 DO - 10.1007/s11103-013-0158-5 ID - Chen2014 ER - TY - JOUR AU - Correa, L. G. AU - Riano-Pachon, D. M. AU - Schrago, C. G. AU - Santos, R. V. AU - Mueller-Roeber, B. AU - Vincentz, M. PY - 2008 DA - 2008// TI - The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes JO - PLoS One VL - 3 UR - https://doi.org/10.1371/journal.pone.0002944 DO - 10.1371/journal.pone.0002944 ID - Correa2008 ER - TY - JOUR AU - Fu, F. AU - Xue, H. PY - 2010 DA - 2010// TI - Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator JO - Plant Physiol VL - 154 UR - https://doi.org/10.1104/pp.110.159517 DO - 10.1104/pp.110.159517 ID - Fu2010 ER - TY - JOUR AU - Godoy, M. AU - Franco-Zorrilla, J. M. AU - Pérez-Pérez, J. AU - Oliveros, J. C. AU - Lorenzo, O. AU - Solano, R. PY - 2011 DA - 2011// TI - Improved protein-binding microarrays for the identification of DNA-binding specificities of transcription factors JO - Plant J VL - 66 UR - https://doi.org/10.1111/j.1365-313X.2011.04519.x DO - 10.1111/j.1365-313X.2011.04519.x ID - Godoy2011 ER - TY - JOUR AU - Hamada, K. AU - Hongo, K. AU - Suwabe, K. AU - Shimizu, A. AU - Nagayama, T. AU - Abe, R. AU - Kikuchi, S. AU - Yamamoto, N. AU - Fujii, T. AU - Yokoyama, K. AU - Tsuchida, H. AU - Sano, K. AU - Mochizuki, T. AU - Oki, N. AU - Horiuchi, Y. AU - Fujita, M. AU - Watanabe, M. AU - Matsuoka, M. AU - Kurata, N. AU - Yano, K. PY - 2011 DA - 2011// TI - OryzaExpress: an integrated database of gene expression networks and omics annotations in rice JO - Plant Cell Physiol VL - 52 UR - https://doi.org/10.1093/pcp/pcq195 DO - 10.1093/pcp/pcq195 ID - Hamada2011 ER - TY - JOUR AU - Hiei, Y. AU - Ohta, S. AU - Komari, T. AU - Kumashiro, T. PY - 1994 DA - 1994// TI - Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA JO - Plant J VL - 6 UR - https://doi.org/10.1046/j.1365-313X.1994.6020271.x DO - 10.1046/j.1365-313X.1994.6020271.x ID - Hiei1994 ER - TY - JOUR AU - Jung, C. AU - Kim, Y. AU - Oh, N. I. AU - Shim, J. S. AU - Seo, J. S. AU - Do Choi, Y. AU - Nahm, B. H. AU - Cheong, J. PY - 2012 DA - 2012// TI - Quadruple 9-mer-based protein binding microarray analysis confirms AACnG as the consensus nucleotide sequence sufficient for the specific binding of AtMYB44 JO - Mol Cells VL - 34 UR - https://doi.org/10.1007/s10059-012-0209-9 DO - 10.1007/s10059-012-0209-9 ID - Jung2012 ER - TY - JOUR AU - Jung, H. AU - Lee, D. K. AU - Do Choi, Y. AU - Kim, J. K. PY - 2015 DA - 2015// TI - OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth JO - Plant Sci VL - 236 UR - https://doi.org/10.1016/j.plantsci.2015.04.018 DO - 10.1016/j.plantsci.2015.04.018 ID - Jung2015 ER - TY - JOUR AU - Kawakatsu, T. AU - Yamamoto, M. P. AU - Hirose, S. AU - Yano, M. AU - Takaiwa, F. PY - 2008 DA - 2008// TI - Characterization of a new rice glutelin gene GluD-1 expressed in the starchy endosperm JO - J Exp Bot VL - 59 UR - https://doi.org/10.1093/jxb/ern265 DO - 10.1093/jxb/ern265 ID - Kawakatsu2008 ER - TY - JOUR AU - Kawakatsu, T. AU - Yamamoto, M. P. AU - Touno, S. M. AU - Yasuda, H. AU - Takaiwa, F. PY - 2009 DA - 2009// TI - Compensation and interaction between RISBZ1 and RPBF during grain filling in rice JO - Plant J VL - 59 UR - https://doi.org/10.1111/j.1365-313X.2009.03925.x DO - 10.1111/j.1365-313X.2009.03925.x ID - Kawakatsu2009 ER - TY - JOUR AU - Kim, M. AU - Lee, T. AU - Pahk, Y. AU - Kim, Y. AU - Park, H. AU - Do Choi, Y. AU - Nahm, B. H. AU - Kim, Y. PY - 2009 DA - 2009// TI - Quadruple 9-mer-based protein binding microarray with DsRed fusion protein JO - BMC Mol Biol VL - 10 UR - https://doi.org/10.1186/1471-2199-10-1 DO - 10.1186/1471-2199-10-1 ID - Kim2009 ER - TY - JOUR AU - Kim, M. AU - Chung, P. J. AU - Lee, T. AU - Kim, T. AU - Nahm, B. H. AU - Kim, Y. PY - 2012 DA - 2012// TI - Convenient determination of protein-binding DNA sequences using quadruple 9-mer-based microarray and DsRed-monomer fusion protein JO - Methods Mol Biol VL - 786 UR - https://doi.org/10.1007/978-1-61779-292-2_4 DO - 10.1007/978-1-61779-292-2_4 ID - Kim2012 ER - TY - JOUR AU - Lee, T. H. AU - Kim, Y. K. AU - Pham, T. T. AU - Song, S. I. AU - Kim, J. K. AU - Kang, K. Y. AU - An, G. AU - Jung, K. H. AU - Galbraith, D. W. AU - Kim, M. AU - Yoon, U. H. AU - Nahm, B. H. PY - 2009 DA - 2009// TI - RiceArrayNet: a database for correlating gene expression from transcriptome profiling, and its application to the analysis of coexpressed genes in rice JO - Plant Physiol VL - 151 UR - https://doi.org/10.1104/pp.109.139030 DO - 10.1104/pp.109.139030 ID - Lee2009 ER - TY - STD TI - Lorenz WW, Alba R, Yu Y, Bordeaux JM, Sim\oes M, Dean JF (2011) Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.). BMC Genomics 12:1 ID - ref14 ER - TY - JOUR AU - Movahedi, S. AU - Peer, Y. AU - Vandepoele, K. PY - 2011 DA - 2011// TI - Comparative network analysis reveals that tissue specificity and gene function are important factors influencing the mode of expression evolution in Arabidopsis and rice JO - Plant Physiol VL - 156 UR - https://doi.org/10.1104/pp.111.177865 DO - 10.1104/pp.111.177865 ID - Movahedi2011 ER - TY - JOUR AU - Nakase, M. AU - Aoki, N. AU - Matsuda, T. AU - Adachi, T. PY - 1997 DA - 1997// TI - Characterization of a novel rice bZIP protein which binds to the alpha-globulin promoter JO - Plant Mol Biol VL - 33 UR - https://doi.org/10.1023/A:1005784717782 DO - 10.1023/A:1005784717782 ID - Nakase1997 ER - TY - JOUR AU - Onodera, Y. AU - Suzuki, A. AU - Wu, C. AU - Washida, H. AU - Takaiwa, F. PY - 2001 DA - 2001// TI - A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif JO - J Biol Chem VL - 276 ID - Onodera2001 ER - TY - JOUR AU - Orian, A. PY - 2006 DA - 2006// TI - Chromatin profiling, DamID and the emerging landscape of gene expression JO - Curr Opin Genet Dev VL - 16 UR - https://doi.org/10.1016/j.gde.2006.02.008 DO - 10.1016/j.gde.2006.02.008 ID - Orian2006 ER - TY - JOUR AU - Pokholok, D. K. AU - Hannett, N. M. AU - Young, R. A. PY - 2002 DA - 2002// TI - Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo JO - Mol Cell VL - 9 UR - https://doi.org/10.1016/S1097-2765(02)00502-6 DO - 10.1016/S1097-2765(02)00502-6 ID - Pokholok2002 ER - TY - JOUR AU - Pysh, L. D. AU - Aukerman, M. J. AU - Schmidt, R. J. PY - 1993 DA - 1993// TI - OHP1: a maize basic domain/leucine zipper protein that interacts with opaque2 JO - Plant Cell VL - 5 UR - https://doi.org/10.1105/tpc.5.2.227 DO - 10.1105/tpc.5.2.227 ID - Pysh1993 ER - TY - JOUR AU - Ren, B. AU - Robert, F. AU - Wyrick, J. J. AU - Aparicio, O. AU - Jennings, E. G. AU - Simon, I. AU - Zeitlinger, J. AU - Schreiber, J. AU - Hannett, N. AU - Kanin, E. AU - Volkert, T. L. AU - Wilson, C. J. AU - Bell, S. P. AU - Young, R. A. PY - 2000 DA - 2000// TI - Genome-wide location and function of DNA binding proteins JO - Science VL - 290 UR - https://doi.org/10.1126/science.290.5500.2306 DO - 10.1126/science.290.5500.2306 ID - Ren2000 ER - TY - JOUR AU - Schmidt, R. J. AU - Ketudat, M. AU - Aukerman, M. J. AU - Hoschek, G. PY - 1992 DA - 1992// TI - Opaque-2 is a transcriptional activator that recognizes a specific target site in 22-kD zein genes JO - Plant Cell VL - 4 UR - https://doi.org/10.1105/tpc.4.6.689 DO - 10.1105/tpc.4.6.689 ID - Schmidt1992 ER - TY - JOUR AU - Sohn, S. I. AU - Kim, Y. H. AU - Cho, J. H. AU - Kim, J. K. AU - Lee, J. Y. PY - 2006 DA - 2006// TI - An efficient selection scheme for Agrobacterium-mediated co-transformation of rice using two selectable marker genes hpt and bar JO - Korean J Breed Sci VL - 38 ID - Sohn2006 ER - TY - JOUR AU - Takaiwa, F. AU - Yamanouchi, U. AU - Yoshihara, T. AU - Washida, H. AU - Tanabe, F. AU - Kato, A. AU - Yamada, K. PY - 1996 DA - 1996// TI - Characterization of common cis-regulatory elements responsible for the endosperm-specific expression of members of the rice glutelin multigene family JO - Plant Mol Biol VL - 30 UR - https://doi.org/10.1007/BF00019553 DO - 10.1007/BF00019553 ID - Takaiwa1996 ER - TY - JOUR AU - Steensel, B. AU - Delrow, J. AU - Henikoff, S. PY - 2001 DA - 2001// TI - Chromatin profiling using targeted DNA adenine methyltransferase JO - Nat Genet VL - 27 UR - https://doi.org/10.1038/85871 DO - 10.1038/85871 ID - Steensel2001 ER - TY - JOUR AU - Vicente-Carbajosa, J. AU - Onate, L. AU - Lara, P. AU - Diaz, I. AU - Carbonero, P. PY - 1998 DA - 1998// TI - Barley BLZ1: a bZIP transcriptional activator that interacts with endosperm-specific gene promoters JO - Plant J VL - 13 UR - https://doi.org/10.1111/j.1365-313X.1998.00068.x DO - 10.1111/j.1365-313X.1998.00068.x ID - Vicente-Carbajosa1998 ER - TY - JOUR AU - Wang, J. AU - Xu, H. AU - Zhu, Y. AU - Liu, Q. AU - Cai, X. PY - 2013 DA - 2013// TI - OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm JO - J Exp Bot VL - 64 UR - https://doi.org/10.1093/jxb/ert187 DO - 10.1093/jxb/ert187 ID - Wang2013 ER - TY - JOUR AU - Wong, J. H. AU - Balmer, Y. AU - Cai, N. AU - Tanaka, C. K. AU - Vensel, W. H. AU - Hurkman, W. J. AU - Buchanan, B. B. PY - 2003 DA - 2003// TI - Unraveling thioredoxin-linked metabolic processes of cereal starchy endosperm using proteomics JO - FEBS Lett VL - 547 UR - https://doi.org/10.1016/S0014-5793(03)00696-3 DO - 10.1016/S0014-5793(03)00696-3 ID - Wong2003 ER - TY - JOUR AU - Wu, C. AU - Washida, H. AU - Onodera, Y. AU - Harada, K. AU - Takaiwa, F. PY - 2000 DA - 2000// TI - Quantitative nature of the prolamin‐box, ACGT and AACA motifs in a rice glutelin gene promoter: minimal cis‐element requirements for endosperm‐specific gene expression JO - Plant J VL - 23 UR - https://doi.org/10.1046/j.1365-313x.2000.00797.x DO - 10.1046/j.1365-313x.2000.00797.x ID - Wu2000 ER - TY - JOUR AU - Wyrick, J. J. AU - Aparicio, J. G. AU - Chen, T. AU - Barnett, J. D. AU - Jennings, E. G. AU - Young, R. A. AU - Bell, S. P. AU - Aparicio, O. M. PY - 2001 DA - 2001// TI - Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins JO - Science VL - 294 UR - https://doi.org/10.1126/science.1066101 DO - 10.1126/science.1066101 ID - Wyrick2001 ER - TY - JOUR AU - Xue, L. AU - Zhang, J. AU - Xue, H. PY - 2012 DA - 2012// TI - Genome-wide analysis of the complex transcriptional networks of rice developing seeds JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0031081 DO - 10.1371/journal.pone.0031081 ID - Xue2012 ER - TY - JOUR AU - Yamamoto, M. P. AU - Onodera, Y. AU - Touno, S. M. AU - Takaiwa, F. PY - 2006 DA - 2006// TI - Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes JO - Plant Physiol VL - 141 UR - https://doi.org/10.1104/pp.106.082826 DO - 10.1104/pp.106.082826 ID - Yamamoto2006 ER - TY - JOUR AU - Yi, N. AU - Oh, S. AU - Kim, Y. S. AU - Jang, H. AU - Park, S. AU - Jeong, J. S. AU - Song, S. I. AU - Do Choi, Y. AU - Kim, J. PY - 2011 DA - 2011// TI - Analysis of the Wsi18, a stress-inducible promoter that is active in the whole grain of transgenic rice JO - Transgenic Res VL - 20 UR - https://doi.org/10.1007/s11248-010-9400-y DO - 10.1007/s11248-010-9400-y ID - Yi2011 ER - TY - JOUR AU - Zhu, Y. AU - Cai, X. AU - Wang, Z. AU - Hong, M. PY - 2003 DA - 2003// TI - An interaction between a MYC protein and an EREBP protein is involved in transcriptional regulation of the rice Wx gene JO - J Biol Chem VL - 278 UR - https://doi.org/10.1074/jbc.M302806200 DO - 10.1074/jbc.M302806200 ID - Zhu2003 ER -