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Table 7 Phenotypic effect of grain yield QTLs and QTL clusters identified in stagnant flooding condition

From: Identification of QTLs for yield and agronomic traits in rice under stagnant flooding conditions

qGY3 and C3S QTLsa)

qGY5

qGY6

C5L QTLsc)

C6C QTLsd)

#RIL

DTF (d)

PH (cm)

TN

PN

FLL (cm)

FLW (cm)

PL (cm)

BM (g/m2)

SER (cm/d)

HI

GW (g)

LSL1 (cm)

LSL2 (cm)

LSL3 (cm)

GY (kg/ha)

SR (%)

+

+

+

NA

NA

28

96

134.2

7

7

29.8

1.83

25.8

1037.1

1.35

0.35

2.67

14.9

18.0

28.6

3408

71.2

+

+

-

NA

NA

12

97

129.8

7

6

28.7

1.77

26.1

907.4

1.32

0.30

2.66

14.6

17.8

28.6

2476

67.0

+

-

+

NA

NA

25

97

134.9

7

6

29.3

1.83

26.3

1070.3

1.39

0.28

2.76

14.6

18.0

28.2

2908

71.7

-

+

+

NA

NA

35

93

127.7

7

6

30.5

1.76

25.1

984.8

1.42

0.28

2.60

14.2

17.5

28.4

2610

68.6

+

-

-

NA

NA

8

97

128.2

6

5

27.5

1.86

25.6

914.2

1.31

0.25

2.79

13.1

16.7

29.5

2249

71.3

-

+

-

NA

NA

8

97

122.6

6

6

28.4

1.74

25.8

888.8

1.23

0.29

2.56

14.3

16.3

25.2

2361

66.9

-

-

+

NA

NA

19

95

126.6

7

6

29.8

1.79

25.0

967.7

1.30

0.26

2.68

14.0

17.8

27.9

2183

64.0

-

-

-

NA

NA

1

97

119.2

4

4

27.4

1.84

27.3

544.7

1.03

0.28

3.14

12.5

14.3

21.0

1801

58.3

NAb)

NA

NA

+

NA

83

95

132.7

7

6

30.2

1.80

25.7

1013.6

1.43

0.30

2.65

14.8

18.2

28.7

2856

69.3

NA

NA

NA

-

NA

32

97

125.2

7

6

28.1

1.78

25.5

951.6

1.21

0.26

2.72

13.1

16.4

26.0

2390

67.3

NA

NA

NA

NA

+

74

95

130.2

7

7

30.2

1.81

26.0

1001.6

1.39

0.30

2.68

14.4

17.6

28.3

2879

69.7

NA

NA

NA

NA

-

32

97

131.1

7

6

28.7

1.77

25.6

997.1

1.30

0.28

2.64

14.7

17.6

28.0

2572

67.7

  1. a)a cluster of QTLs on the top of chromosome 3S
  2. b)not applied
  3. c)a cluster of QTLs on the lower part of chromosome 5L just below qGY5
  4. d)a cluster of QTLs close to the centromeric region of chromosome 6