Table 6 Genomic positions of QTLs identified in control irrigated condition with its QTL cluster and comparison to the QTLs identified in stagnant flooding in this study and previously published QTLs
From: Identification of QTLs for yield and agronomic traits in rice under stagnant flooding conditions
QTL | Studies shared common region |
|---|---|
qGY12.1 | qtl12.1: (Bernier et al. 2007) |
qGW1.1 | GW1-2: (Yu et al. 2008); qGW1.1: this study under SF |
qGW2.1 | gw-2: (Lu et al. 1997); QKw2b: (Li et al. 1997); qGW-2: (Cho et al. 2003); Kw2-2: (Gao et al. 2004); qLSL 3 2.1: this study under control |
qGW2.2 | QKw2a: (Li et al. 1997); qTGWT-2-2: (Zhuang et al. 2002); tgw2: (Ishimaru 2003); gw2.1: (Thomson et al. 2003); qTGW-2a: (Zou et al. 2005) |
qGW5.1 | gw-5: (Lu et al. 1997); QKw5: (Li et al. 1997); qGW5.1: this study under SF |
qHI3.1 | qhi3.3/qhi3.4/qhi3.5: (Lanceras et al. 2004); qFLW3.1, qDTH3.1: this study under control and SF; qLSL 1 3.1, qBM3.1: this study under control |
qHI7.1 | none |
qTN3.1 | TN(R3): (Kobayashi et al. 2003); qPN3.1, qLSL 3 3.1: this study under control |
qPN1.1 | PnN(R3-1): (Kobayashi et al. 2003); npp(1.1): Nagata et al. 2002; qBM1.1: this study under control |
qPN3.1 | PN(3): (Jiang et al. 2004); qFLW3.1, qDTH3.1: this study under control and SF; qTN3.1, qLSL 3 3.1: this study under control |
qBM1.1 | PW(1): (Lian et al. 2005); qPN1.1: this study under control |
qBM3.1 | qHI3.1; qLSL 1 3.1: this study under control |
qPL1.1 | (Mei et al. 2005) |
qPL2.1 | pl2: (Xing et al. 2001); qPL2-1: (Cui et al. 2002); (Mei et al. 2003) 3; qFLL2.1: this study under control |
qPL6.1 | (Mei et al. 2003); PL(6): (Jiang et al. 2004) J; qSER6.1, qLSL 3 6.1: this study under control |
qPL7.1 | (Mei et al. 2005) |
qPL9.1 | pl9: (Xing et al. 2001); qPL-9: (Cho et al. 2003); pl9.1: (Septiningsih et al. 2003); pl9.1: (Thomson et al. 2003); (Marri et al. 2005); (Li et al. 2006); qPL9.1: this study under SF |
qPH1.1 | (Li et al. 1998); (Mei et al. 2003); qLSL 1 1.1: this study under control |
qPH3.1 | |
qPH5.1 | (Mei et al. 2003); ph5.1: (Moncada et al. 2001); (Thomson et al. 2003); qPH5.1: this study under SF; qLSL 1− 5.1, qLSL 2 5.1, qLSL 3 5.1, qSER5.1, qFLL5.1: this study under control and SF |
qSER5.1 | qSER5.1: this study under SF; qPH5.1, qLSL 1− 5.1, qLSI2-5.1, qLSL 2 5.1, qFLL5.1: this study under control and SF |
qSER6.1 | qSER6.1: this study under SF; qPL6.1, qLSL 3 6.1: this study under control |
qLSL 1 1.1 | qPH1.1: this study under control |
qLSL 1 3.1 | qBM3.1, qHI3.1: this study under control |
qLSL 1 5.1 | qLSL 1 5.1: this study under SF; qPH5.1, qLSL 2 5.1, qLSL 3 5.1, qSER5.1, qFLL5.1: this study under control and SF |
qLSL 2 3.1 | none |
qLSL 2 5.1 | qLSL 2 5.1: this study under SF; qPH5.1, qLSL 1 5.1, qLSL 3 5.1, qSER5.1, qFLL5.1: this study under control and SF |
qLSI 2 9.1 | none |
qLSL 3 2.1 | qGW2.1: this study under control |
qLSL 3 3.1 | qTN3.1, qPN3.1: this study under control |
qLSL 3 5.1 | qLSL 3 5.1: this study under SF; qPH5.1, qSER5.1, qLSL 1 5.1, qLSL 2 5.1, qFLL5.1: this study under control and SF |
qLSL 3 6.1 | qSER6.1: this study under control and SF; qPL6.1: this study under control |
qLSI 3 8.1 | none |
qLSL 3 11.1 | none |
qFLL1.1 | (Mei et al. 2005) |
qFLL2.1 | qPL2.1: this study under irrigated |
qFLL4.1 | (Mei et al. 2005) |
qFLL5.1 | QFll7: Yue et al. 2006; Yan et al. 2003; qFLL5.1: this study under SF; qPH5.1, qLSL 1 5.1, qLSL 2 5.1, qLSL 3 5.1, qSER5.1: this study under irrigated and SF |
qFLW3.1 | (Mei et al. 2005); qFLW3.1: this study under SF; qHI3.1, qBM3.1, and qLSL 1 3.1: this study under irrigated); qDTF3.1: this study under irrigated and SF |
qFLW4.1 | |
qFLW5.1 | none |
qFLW12.1 | none |
qFLW12.2 | (Mei et al. 2005) |
qDTF3.1 | (Albar et al. 1998); dth3.1: (Moncada et al. 2001); qHD-3-1: (Takeuchi et al. 2001); Hd9: (Lin et al. 2002) 2; qHDD3-1: (Hittalmani et al. 2003); QHd3a: (Li et al. 2003); (Mei et al. 2003); qEMF3: (Hirabayashi et al. 2014); qDTF3.1: this study under SF; qFLW3.1: this study under control and SF; qHI3.1, qBM3.1, and qLSL 1 3.1: this study under control |
qDTF6.1 | QHd6b: (Li et al. 2003); (Mei et al. 2003); qDTF6.1: this study under SF |
qDTF10.1 | (Price et al. 1997); Li et al. (1998)); qDTF10.1: this study under SF |