Table 4 QTLs for yield in agronomic traits from a RIL population of Ciherang-Sub1/IR10F365 identified under irrigated control condition

GW

qGW1.1

1

214137-id1007975

C

4.74

11.4

−0.05

5.34

15.2

−0.05

4.40

12.8

0.06

4.35

12.7

0.05

qGW2.1

2

1661393-1981019

C

3.29

6.5

−0.04

4.21

12.2

−0.05

3.13

9.3

0.04

3.14

9.3

0.04

qGW2.1

2

2153125-2422788

C

2.74

8.2

−0.04

qGW5.1

5

5428382-ud5000983

C

2.39

5.0

−0.03

3.60

10.5

−0.04

2.51

7.5

0.04

3.13

9.3

0.04

DTF

qDTF3.1

3

2499734-2519460

C

21.81

42.2

−2.44

13.53

34.9

−2.20

17.36

41.7

2.35

13.14

33.6

2.22

qDTF6.1

6

id6015421-6906738

I

4.09

11.9

1.70

3.70

10.9

−1.70

qDTF10.1

10

id10003608-10579252

I

5.70

9.0

1.13

2.99

8.8

1.11

5.43

15.5

−1.18

FLW

qFLW3.1

3

2499734-2519460

C

5.18

11.0

−0.05

3.49

10.3

0.10

qFLW4.1

4

4683923-4728960

C

8.88

20.1

−0.09

3.73

10.9

−0.06

3.98

11.6

0.06

3.29

9.7

0.06

qFLW5.1

5

id5001564-id5003312

C

2.67

5.4

−0.04

2.72

8.1

−0.05

qFLW12.1

12

c12p5738988-id12005832

I

4.80

10.3

0.06

qFLW12.2

12

12740505-12939027

C

3.44

7.3

−0.05

FLL

qFLL1.1

1

id1016971-1305247

C

3.81

25.2

−1.79

qFLL2.1

2

1543608-1902547

I

3.00

6.8

0.96

2.97

8.8

1.06

3.85

11.3

−1.19

3.54

10.4

−1.17

qFLL4.1

4

id4002348-4253547

I

3.05

6.8

0.99

3.15

9.3

−1.15

qFLL5.1

5

5719825-5747652

I

3.90

9.1

1.12

GY

qGY12.1

12

12648838-12931835

I

3.39

9.2

247.20

2.27

6.8

−206.30

HI

qHI3.1

3

2499734-2560888

I

3.50

8.0

0.02

4.91

14.2

−0.03

2.25

6.7

−0.02

qHI7.1

7

id7002749-7730100

C

3.50

10.3

0.05

LSL₁

qLSL ₁ 1.1

1

275443-id1007975

C

4.37

9.8

−0.78

3.18

9.4

−0.77

qLSL ₁ 3.1

3

fd9-2519460

C

5.33

13.1

0.93

3.78

11.0

−0.82

3.95

11.6

0.83

3.23

9.6

0.76

qLSL ₁ 5.1

5

ud5000983-5747652

I

3.93

11.8

0.88

2.79

8.3

−0.86

3.80

11.1

0.88

LSL₂

qLSL ₂ 3.1

3

id3003846-3236543

C

3.70

8.1

−0.67

2.59

7.8

−0.65

3.23

9.6

0.94

qLSL ₂ 5.1

5

5515384-id5013231

I

4.95

11.2

0.84

2.77

9.4

0.76

3.03

9.0

−0.83

qLSL ₂ 9.1

9

9592671-id9007287

I

4.33

16.8

0.97

2.84

17.6

0.99

4.45

12.9

−1.59

3.29

9.7

−1.45

LSL₃

qLSL ₃ 2.1

2

1562092-id2007797

C

3.92

11.4

−1.06

4.41

12.8

1.10

3.89

11.4

1.08

qLSL ₃ 3.1

3

2573346-2610698

C

2.63

4.1

−0.69

3.60

10.5

−1.03

4.40

12.8

1.24

3.18

9.4

1.03

qLSL ₃ 5.1

5

ud5000983-5747652

I

6.73

12.8

1.17

2.96

10.2

1.03

3.12

9.3

−1.02

qLSL ₃ 6.1

6

6619487-6816224

C

5.83

10.4

−1.10

qLSL ₃ 8.1

8

8803052-9049928

I

7.41

14.7

1.29

4.18

22.1

1.49

6.24

17.6

−2.47

5.59

16.0

−2.38

qLSL ₃ 11.1

11

id11007523-11608239

C

5.22

9.3

−0.95

3.40

10.0

−0.97

4.03

11.8

1.19

3.69

10.9

1.05

SER

qSER5.1

5

5515384-id5013231

I

8.10

20.0

0.08

6.53

20.0

0.08

3.02

9.0

−0.06

7.08

19.8

0.09

qSER6.1

6

6585321-6816224

C

3.70

8.0

−0.05

PH

qPH1.1

1

197232-id1007975

C

3.13

10.2

−2.38

2.55

7.6

2.09

qPH3.1

3

2519460-id3002805

C

3.15

7.0

−1.96

3.12

9.3

2.31

qPH5.1

5

ud5000983-5747652

I

9.90

23.9

3.71

8.22

22.4

3.57

3.98

11.7

−2.99

7.62

21.1

−3.58

TN

qTN3.1

3

2519460-id3003846

I

3.31

9.3

0.41

3.85

11.7

0.45

3.64

10.7

−0.49

4.29

12.5

−0.49

PL

qPL1.1

1

id1015390-id1016971

C

3.51

6.7

−0.44

qPL2.1

2

1529216-1845605

I

7.11

14.3

0.66

4.66

13.4

0.60

4.80

13.9

−0.62

4.59

13.3

−0.61

qPL6.1

6

6619487-6816224

C

4.91

10.3

−0.55

5.92

18.4

−0.72

5.01

14.4

0.66

4.81

13.9

0.64

qPL7.1

7

id7003853-id7004922

I

2.84

8.4

0.49

3.29

9.7

−0.56

3.62

10.7

−0.58

qPL9.1

9

9592671-9869869

I

3.36

20.4

0.73

3.27

9.7

−0.83

2.92

8.7

−0.73

PN

qPN1.1

1

147907-395936

I

2.55

7.6

0.39

3.49

10.3

−0.55

3.16

9.4

−0.55

qPN3.1

3

2573346-2610698

I

2.88

8.9

0.43

2.74

8.2

−0.47

2.83

8.4

−0.44

BM

qBM1.1

1

147907-275443

I

3.92

10.2

51.73

2.44

72.0

43.16

3.68

10.8

−50.83

2.30

6.9

−42.4

qBM3.1

3

2499734-2560888

C

2.89

7.0

−45.20

3.33

9.9

49.64