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Rice

Table 3 QTLs for yield in agronomic traits from a RIL population of Ciherang-Sub1/IR10F365 identified under stagnant flooding condition

From: Identification of QTLs for yield and agronomic traits in rice under stagnant flooding conditions

Traita)

QTL

Chr

Flanking markers

Sourceb)

QTL Cart. CIM

QTL Cart. IMc)

QGENE CIM

QGENE IM

     

LOD

R2

Add

LOD

R2

Add

LOD

R2

Add

LOD

R2

Add

GW

q GW1.1

1

214137-id1007975

C

4.36

8.7

−0.06

4.21

12.3

−0.07

3.35

10.0

0.05

3.24

10.0

0.07

q GW2.1

2

id2004418-1845605

C

   

2.70

8.0

−0.05

      

q GW3.1

3

2499734-id3002805

C

   

2.80

10.2

−0.06

      

qGW5.1

5

5428382-ud5000983

C

4.07

8.3

−0.06

3.80

11.0

−0.06

3.73

11.0

0.08

4.17

12.0

0.07

qGW10.1

10

10603169-10703329

I

6.30

13.1

0.07

3.15

10.0

0.06

      

qGW10.2

10

9958372-id10003608

C

4.14

9.0

−0.06

   

3.41

10.0

−0.07

2.50

8.0

−0.06

DTF

qDTF1.1

1

801364-id1016674

I

3.08

6.0

0.88

2.78

8.2

1.03

3.40

10.0

−0.89

   

qDTF3.1

3

2499734-2560888

C

12.50

26.0

−1.80

6.81

20.0

−1.57

5.43

16.0

1.20

6.00

17.0

1.49

qDTF5.1

5

5515384-id5013231

C

4.11

7.0

−1.01

3.17

9.3

−1.13

3.65

11.0

1.27

3.63

11.0

1.23

qDTF6.1

6

id6015097-6906738

I

   

3.95

12.0

1.54

   

4.37

13.0

−1.73

qDTF10.1

10

id10002842-10586997

I

5.22

9.0

1.07

3.01

9.0

1.04

2.68

8.0

−0.82

   

FLW

qFLW3.1

3

2499734-2560888

C

4.00

11.3

−0.04

3.47

11.0

−0.04

   

3.22

10.0

0.04

qFLW7.1

7

7869914-7949610

C

   

3.11

14.0

−0.04

      

FLL

qFLL4.1

4

id4000574-4295290

I

4.11

9.3

1.10

2.78

8.2

1.03

3.79

11.1

−1.12

2.87

8.5

−1.08

qFLL5.1

5

ud5000983-5747652

I

6.18

14.0

1.36

3.69

11.0

1.17

   

3.53

10.4

−1.18

qFLL6.1

6

6887046-6906738

C

   

2.71

8.5

−1.28

   

2.98

8.9

1.42

qFLL9.1

9

9592671-id9007287

I

2.94

13.0

1.23

   

2.99

8.9

−1.65

2.60

7.8

−1.85

GY

qGY3.1

3

2499734-2560888

C

6.20

14.3

−321.60

2.83

9.0

−246.10

2.64

8.0

224.3

2.84

8.4

250.46

qGY5.1

5

id5003312-ud5000983

I

3.66

12.2

301.7

   

2.15

7.0

−190.7

   

qGY6.1

6

id6000402-5903052

C

3.46

7.4

−282.1

   

3.04

9.0

263.8

   

HI

qHI2.1

2

1489783-1845605

I

3.41

72.4

0.03

   

2.18

6.6

−0.02

   

qHI5.1

5

id5003312-5515384

I

3.34

72

0.03

         

qHI7.1

7

7768382-7949610

C

8.67

20.4

−0.05

3.64

10.6

−0.03

7.07

19.7

0.05

3.80

11.1

0.03

qHI7.2

7

7102234-id7002749

I

4.65

10

0.03

         

LSL1

qLSL 1 5.1

5

ud5000983-5747652

I

4.40

11.0

0.74

4.00

12.0

0.76

   

4.04

12.0

−0.79

LSL2

qLSL 2 5.1

5

ud5000983-5747652

I

4.73

10.2

0.82

4.86

15.0

0.96

2.57

7.7

−0.82

4.96

14.3

−0.98

qLSL 2 6.1

6

6228054-6585321

I

4.10

9.0

0.91

      

3.66

11.0

−1.38

LSL3

qLSL 3 2.1

2

1529216-1845605

C

4.16

10.0

−1.06

2.99

9.0

−1.00

2.37

7.1

0.85

2.78

8.3

0.97

q LSL 3 5.1

5

5515384-5747652

I

3.49

8.0

1.00

2.72

9.0

1.04

   

3.17

9.4

1.11

SER

qSER5.1

5

ud5000983-id5013231

I

12.5

32.0

0.11

8.63

24.0

0.09

4.12

12.0

−0.06

9.20

24.9

−0.10

qSER6.1

6

6619487-6816224

C

3.05

6.0

−0.05

2.82

8.3

−0.06

3.79

11.1

0.05

2.87

8.5

0.06

PH

qPH3.1

3

2499734-2560888

C

4.04

8.3

−2.77

3.10

9.4

−2.88

3.34

10.0

2.67

2.57

8.00

2.69

qPH5.1

5

ud5000983-5747652

I

5.59

12.1

3.45

4.73

14.0

3.65

   

4.97

14.3

−3.81

qPH6.1

6

6228054-6585321

I

      

3.40

10.0

−3.74

   

PL

qPL7.1

7

id7004922-7949610

I

3.21

11.2

0.61

         

qPL9.1

9

9641863-9869869

I

5.47

22.0

0.82

4.42

21.2

0.81

3.29

10.0

−0.53

3.64

11.0

−0.61

SR

qSR1.1

1

20215-id1001821

I

2.89

10.0

3.18

   

2.63

8.0

−2.77

   

qSR6.1

6

id6008688-6766627

C

2.97

7.3

−2.99

   

2.50

7.4

4.01

   
  1. a) DTF days to flowering, FLW flag leaf width, FLL flag leaf length, GY grain yield per plot, HI harvest index, LSL 1 , LSL 2 , and LSL 3 , respectively leaf sheath length for the first, second and third internodes, SER shoot elongation rate, PH plant height, PL panicle length, and SR survival rate
  2. b)C: Ciherang-Sub1; I: IR10F365
  3. c)underlined and bold numbers: significant at P ≤ 0.01; bold numbers: significant at P ≤ 0.05; italic: not significant but with LOD ≥ 2.0
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