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Rice
Fig. 4 | Rice

Fig. 4

From: Rice Chloroplast Genome Variation Architecture and Phylogenetic Dissection in Diverse Oryza Species Assessed by Whole-Genome Resequencing

Fig. 4

A tanglegram phylogenetic analysis using trees from ML and BI methods to compare the difference of the two methods and illustrate the relationships of the different Oryza groups. Here, high-quality variations were applied in both analyses. a Phylogram and radial tree layout of the ML tree based on a best-fit model (SYM + G). b BI-based tree using the best-fit model JC + G. Best-fit models were evaluated using jModeltest. The tanglegram was implemented in Dendroscope using a Neighbor Net-based heuristic method, which use line connects the same accession in two trees to see the difference phylogenetic structure

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