Table 4 A summary of the AI genes co-localizing with SSR markers previously identified to be associated with GY under drought stress in the study by Venuprasad et al. (2009) using the same genetic backgrounds (Apo/IR64). Markers are based on Gramene (O. sativa indica genome)
Chr # | SSR Name | AI genes co-localizing with the QTL marker | Description/ Function | Estimated distance between the marker and the genes (kb) in the indica genome |
|---|---|---|---|---|
1 | RM6703 | LOC_Os01g59980 | zinc finger | 209 |
2 | RM71 | LOC_Os02g15520 | transposon | 67 |
LOC_Os02g15660 | tetratricopeptide repeat | 44 | ||
3 | RM3387 | LOC_Os03g02020 | stress responsive A/B barrel domain containing proteins | 20 |
LOC_Os03g53710 | aldose-1-epimerase | 110 | ||
RM520 | LOC_Os03g54980 | expressed protein | 330 | |
LOC_Os03g55030 | UPD-gucosyl transferase | 360 | ||
6 | RM510 | LOC_Os06g04030 | Histone H3 | 210 |
8 | RM256 | LOC_Os08g38300 | core histone H2A/H2B/H3/H4 | 11 |
LOC_Os08g39150 | expressed protein | 470 | ||
LOC_Os08g39160 | formyl transferase | |||
9 | RM201 | LOC_Os09g35940 | cytochrome P450 | 520 |
12 | RM511 | LOC_Os12g29330 | No apical meristem | 9 |