Table 1 Comparison of the mapping rates using the reads generated from the samples as query sequence and the original MSU7 cDNA reference and the pseudo-reference as the subject sequences
Treatments | Rep 1 | Rep 2 | |||||
|---|---|---|---|---|---|---|---|
Original MSU7 (%) | Pseudo-reference (%) | Improvement (%) | Original MSU7 (%) | Pseudo-reference (%) | Improvement (%) | ||
Control | Apo | 77.42 | 78.43 | 1.01 | 84.19 | 85.31 | 1.12 |
IR64 | 77.92 | 79.03 | 1.11 | 78.07 | 79.68 | 1.61 | |
F1 | 76.65 | 77.77 | 1.12 | 83.78 | 85.23 | 1.45 | |
Stress | Apo | 78.8 | 79.91 | 1.11 | 83.53 | 84.7 | 1.17 |
IR64 | 66.11 | 67.21 | 1.1 | 70.28 | 71.75 | 1.47 | |
F1 | 78.34 | 79.11 | 0.77 | 81.01 | 82.6 | 1.59 | |